Hb_006053_020

Information

Type -
Description -
Location Contig6053: 26782-27372
Sequence    

Annotation

kegg
ID tcc:TCM_038872
description CAP
nr
ID XP_007014136.1
description CAP [Theobroma cacao]
swissprot
ID Q40374
description Pathogenesis-related protein PR-1 OS=Medicago truncatula GN=PR-1 PE=2 SV=1
trembl
ID A0A061GPK4
description CAP OS=Theobroma cacao GN=TCM_038872 PE=4 SV=1
Gene Ontology
ID GO:0005576
description pathogenesis-related protein pr-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50747: 26766-27576
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006053_020 0.0 - - CAP [Theobroma cacao]
2 Hb_039435_020 0.0695339349 - - Lysosomal Pro-X carboxypeptidase, putative [Ricinus communis]
3 Hb_002701_060 0.0734340107 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002122_070 0.0816998478 - - unnamed protein product [Vitis vinifera]
5 Hb_006970_120 0.0939641852 - - conserved hypothetical protein [Ricinus communis]
6 Hb_067558_010 0.1009965846 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
7 Hb_000072_110 0.1083959291 - - PREDICTED: U-box domain-containing protein 35 [Jatropha curcas]
8 Hb_114893_010 0.1099231337 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
9 Hb_000675_010 0.1100047929 - - PREDICTED: cytokinin dehydrogenase 7 [Jatropha curcas]
10 Hb_000380_140 0.1114659311 - - PREDICTED: uncharacterized protein LOC105628069 [Jatropha curcas]
11 Hb_002701_170 0.1136845796 - - PREDICTED: cytochrome P450 85A [Jatropha curcas]
12 Hb_113379_010 0.1137313034 - - PREDICTED: beta-xylosidase/alpha-L-arabinofuranosidase 1 [Jatropha curcas]
13 Hb_000574_010 0.1149280484 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_06096 [Jatropha curcas]
14 Hb_024570_030 0.1152090012 - - cytochrome P450, putative [Ricinus communis]
15 Hb_119443_010 0.1188051915 - - hypothetical protein JCGZ_17348 [Jatropha curcas]
16 Hb_000164_110 0.1219595338 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s44130g [Populus trichocarpa]
17 Hb_001300_240 0.1239869815 - - shikimate dehydrogenase, putative [Ricinus communis]
18 Hb_012539_080 0.1250223878 - - Polyprotein, putative [Solanum demissum]
19 Hb_000041_210 0.1258057226 - - PREDICTED: cysteine-rich receptor-like protein kinase 42 [Jatropha curcas]
20 Hb_010311_020 0.126903617 - - lrr receptor protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_006053_020 Hb_006053_020 Hb_039435_020 Hb_039435_020 Hb_006053_020--Hb_039435_020 Hb_002701_060 Hb_002701_060 Hb_006053_020--Hb_002701_060 Hb_002122_070 Hb_002122_070 Hb_006053_020--Hb_002122_070 Hb_006970_120 Hb_006970_120 Hb_006053_020--Hb_006970_120 Hb_067558_010 Hb_067558_010 Hb_006053_020--Hb_067558_010 Hb_000072_110 Hb_000072_110 Hb_006053_020--Hb_000072_110 Hb_039435_020--Hb_002122_070 Hb_114893_010 Hb_114893_010 Hb_039435_020--Hb_114893_010 Hb_001300_240 Hb_001300_240 Hb_039435_020--Hb_001300_240 Hb_185474_020 Hb_185474_020 Hb_039435_020--Hb_185474_020 Hb_010311_020 Hb_010311_020 Hb_039435_020--Hb_010311_020 Hb_002701_170 Hb_002701_170 Hb_002701_060--Hb_002701_170 Hb_002701_060--Hb_000072_110 Hb_000574_010 Hb_000574_010 Hb_002701_060--Hb_000574_010 Hb_002701_060--Hb_006970_120 Hb_002701_060--Hb_039435_020 Hb_002122_070--Hb_114893_010 Hb_002122_070--Hb_185474_020 Hb_002122_070--Hb_001300_240 Hb_000675_010 Hb_000675_010 Hb_002122_070--Hb_000675_010 Hb_000380_140 Hb_000380_140 Hb_006970_120--Hb_000380_140 Hb_000164_110 Hb_000164_110 Hb_006970_120--Hb_000164_110 Hb_000147_020 Hb_000147_020 Hb_006970_120--Hb_000147_020 Hb_004946_010 Hb_004946_010 Hb_006970_120--Hb_004946_010 Hb_000041_210 Hb_000041_210 Hb_067558_010--Hb_000041_210 Hb_005181_190 Hb_005181_190 Hb_067558_010--Hb_005181_190 Hb_004116_050 Hb_004116_050 Hb_067558_010--Hb_004116_050 Hb_000239_050 Hb_000239_050 Hb_067558_010--Hb_000239_050 Hb_000947_010 Hb_000947_010 Hb_067558_010--Hb_000947_010 Hb_001409_080 Hb_001409_080 Hb_067558_010--Hb_001409_080 Hb_000072_110--Hb_002701_170 Hb_004324_320 Hb_004324_320 Hb_000072_110--Hb_004324_320 Hb_170023_010 Hb_170023_010 Hb_000072_110--Hb_170023_010 Hb_000072_110--Hb_006970_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0889126 6.91104 95.7877 53.7869 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 60.0701 182.859

CAGE analysis