Hb_006059_040

Information

Type transcription factor
Description TF Family: SOH1
Location Contig6059: 28159-31343
Sequence    

Annotation

kegg
ID pvu:PHAVU_007G063000g
description hypothetical protein
nr
ID XP_007143327.1
description hypothetical protein PHAVU_007G063000g [Phaseolus vulgaris]
swissprot
ID Q8VYB1
description Mediator of RNA polymerase II transcription subunit 31 OS=Arabidopsis thaliana GN=MED31 PE=1 SV=1
trembl
ID V7BFP0
description Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G063000g PE=4 SV=1
Gene Ontology
ID GO:0016592
description mediator of rna polymerase ii transcription subunit 31

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50755: 27605-31301 , PASA_asmbl_50756: 29084-29246 , PASA_asmbl_50757: 32176-35639
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006059_040 0.0 transcription factor TF Family: SOH1 hypothetical protein PHAVU_007G063000g [Phaseolus vulgaris]
2 Hb_000069_380 0.0455037826 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
3 Hb_000708_030 0.0647732546 - - PREDICTED: uncharacterized protein LOC105650742 [Jatropha curcas]
4 Hb_005730_040 0.0664195662 - - hypothetical protein PRUPE_ppa004338mg [Prunus persica]
5 Hb_007472_070 0.0696703412 - - cir, putative [Ricinus communis]
6 Hb_000976_140 0.0721722393 - - PREDICTED: uncharacterized protein LOC105646208 isoform X1 [Jatropha curcas]
7 Hb_006570_080 0.0722420275 - - PREDICTED: BRCA1-A complex subunit BRE isoform X1 [Jatropha curcas]
8 Hb_001359_050 0.0728493577 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002445_060 0.0741066286 - - arf gtpase-activating protein, putative [Ricinus communis]
10 Hb_001225_040 0.074226326 - - PREDICTED: meiosis-specific nuclear structural protein 1 isoform X5 [Jatropha curcas]
11 Hb_001699_220 0.0746814325 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH121-like [Jatropha curcas]
12 Hb_001221_110 0.0747771181 transcription factor TF Family: SWI/SNF-BAF60b hypothetical protein JCGZ_11303 [Jatropha curcas]
13 Hb_164390_010 0.0748517091 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
14 Hb_006831_140 0.0768505969 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
15 Hb_000189_600 0.0770190183 - - PREDICTED: protein MON2 homolog isoform X1 [Jatropha curcas]
16 Hb_006520_040 0.0772696711 - - PREDICTED: uncharacterized protein LOC105641714 isoform X2 [Jatropha curcas]
17 Hb_004586_300 0.0777109778 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
18 Hb_183433_010 0.0792156126 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
19 Hb_093458_040 0.0799432021 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
20 Hb_000392_420 0.0801094276 - - PREDICTED: probable aldehyde dehydrogenase isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_006059_040 Hb_006059_040 Hb_000069_380 Hb_000069_380 Hb_006059_040--Hb_000069_380 Hb_000708_030 Hb_000708_030 Hb_006059_040--Hb_000708_030 Hb_005730_040 Hb_005730_040 Hb_006059_040--Hb_005730_040 Hb_007472_070 Hb_007472_070 Hb_006059_040--Hb_007472_070 Hb_000976_140 Hb_000976_140 Hb_006059_040--Hb_000976_140 Hb_006570_080 Hb_006570_080 Hb_006059_040--Hb_006570_080 Hb_000069_380--Hb_000708_030 Hb_000699_030 Hb_000699_030 Hb_000069_380--Hb_000699_030 Hb_001225_040 Hb_001225_040 Hb_000069_380--Hb_001225_040 Hb_010368_010 Hb_010368_010 Hb_000069_380--Hb_010368_010 Hb_001699_220 Hb_001699_220 Hb_000069_380--Hb_001699_220 Hb_006831_140 Hb_006831_140 Hb_000708_030--Hb_006831_140 Hb_003680_120 Hb_003680_120 Hb_000708_030--Hb_003680_120 Hb_000708_030--Hb_000699_030 Hb_000327_270 Hb_000327_270 Hb_000708_030--Hb_000327_270 Hb_000708_030--Hb_005730_040 Hb_093458_040 Hb_093458_040 Hb_000708_030--Hb_093458_040 Hb_005730_040--Hb_000976_140 Hb_002849_130 Hb_002849_130 Hb_005730_040--Hb_002849_130 Hb_005867_070 Hb_005867_070 Hb_005730_040--Hb_005867_070 Hb_000170_090 Hb_000170_090 Hb_005730_040--Hb_000170_090 Hb_005730_040--Hb_001225_040 Hb_004705_170 Hb_004705_170 Hb_007472_070--Hb_004705_170 Hb_000778_010 Hb_000778_010 Hb_007472_070--Hb_000778_010 Hb_000699_150 Hb_000699_150 Hb_007472_070--Hb_000699_150 Hb_000215_300 Hb_000215_300 Hb_007472_070--Hb_000215_300 Hb_000347_250 Hb_000347_250 Hb_007472_070--Hb_000347_250 Hb_000313_220 Hb_000313_220 Hb_000976_140--Hb_000313_220 Hb_000976_140--Hb_002849_130 Hb_015807_050 Hb_015807_050 Hb_000976_140--Hb_015807_050 Hb_001922_150 Hb_001922_150 Hb_000976_140--Hb_001922_150 Hb_000976_140--Hb_000170_090 Hb_002936_010 Hb_002936_010 Hb_006570_080--Hb_002936_010 Hb_001359_050 Hb_001359_050 Hb_006570_080--Hb_001359_050 Hb_005588_060 Hb_005588_060 Hb_006570_080--Hb_005588_060 Hb_000173_280 Hb_000173_280 Hb_006570_080--Hb_000173_280 Hb_000460_030 Hb_000460_030 Hb_006570_080--Hb_000460_030 Hb_168978_010 Hb_168978_010 Hb_006570_080--Hb_168978_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.5188 14.123 13.5687 14.173 7.86476 9.60505
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.7767 12.8984 8.05508 12.8285 12.3213

CAGE analysis