Hb_006059_050

Information

Type -
Description -
Location Contig6059: 32025-35664
Sequence    

Annotation

kegg
ID tcc:TCM_014807
description RNA-binding family protein
nr
ID XP_012090531.1
description PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
swissprot
ID Q9FJN9
description Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PABN2 PE=1 SV=1
trembl
ID A0A067JR63
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26326 PE=4 SV=1
Gene Ontology
ID GO:0000166
description polyadenylate-binding protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50757: 32176-35639 , PASA_asmbl_50759: 33549-33721
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006059_050 0.0 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
2 Hb_003151_040 0.0531502052 transcription factor TF Family: Alfin-like zinc finger family protein [Populus trichocarpa]
3 Hb_008013_050 0.0592962162 transcription factor TF Family: PHD PREDICTED: PHD finger protein At1g33420 [Jatropha curcas]
4 Hb_172426_040 0.0614700103 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
5 Hb_000373_070 0.0635726718 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
6 Hb_005846_040 0.0648077652 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Populus euphratica]
7 Hb_000152_500 0.0660633739 - - PREDICTED: probable mitochondrial intermediate peptidase, mitochondrial [Jatropha curcas]
8 Hb_004109_170 0.0691621097 - - PREDICTED: probable ribokinase [Jatropha curcas]
9 Hb_001140_370 0.069829928 - - PREDICTED: uncharacterized protein LOC105648463 [Jatropha curcas]
10 Hb_000030_030 0.0712140998 - - PREDICTED: ADP-glucose phosphorylase [Jatropha curcas]
11 Hb_000656_240 0.0729882432 - - proteasome subunit alpha type, putative [Ricinus communis]
12 Hb_010098_050 0.0732546443 - - PREDICTED: putative deoxyribonuclease tatdn3-A [Jatropha curcas]
13 Hb_000001_060 0.07486967 - - PREDICTED: N(6)-adenine-specific DNA methyltransferase 2 [Jatropha curcas]
14 Hb_001195_480 0.0753543376 - - cop9 complex subunit, putative [Ricinus communis]
15 Hb_004108_070 0.0760345305 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Jatropha curcas]
16 Hb_024071_020 0.0763239336 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
17 Hb_001703_060 0.0767610219 - - protein kinase, putative [Ricinus communis]
18 Hb_000982_090 0.0773561911 - - PREDICTED: zinc finger HIT domain-containing protein 3 [Jatropha curcas]
19 Hb_000205_090 0.0777680669 - - hypothetical protein POPTR_0019s03570g [Populus trichocarpa]
20 Hb_005271_220 0.0781761116 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_006059_050 Hb_006059_050 Hb_003151_040 Hb_003151_040 Hb_006059_050--Hb_003151_040 Hb_008013_050 Hb_008013_050 Hb_006059_050--Hb_008013_050 Hb_172426_040 Hb_172426_040 Hb_006059_050--Hb_172426_040 Hb_000373_070 Hb_000373_070 Hb_006059_050--Hb_000373_070 Hb_005846_040 Hb_005846_040 Hb_006059_050--Hb_005846_040 Hb_000152_500 Hb_000152_500 Hb_006059_050--Hb_000152_500 Hb_003151_040--Hb_005846_040 Hb_001766_060 Hb_001766_060 Hb_003151_040--Hb_001766_060 Hb_003151_040--Hb_000373_070 Hb_003151_040--Hb_000152_500 Hb_000001_060 Hb_000001_060 Hb_003151_040--Hb_000001_060 Hb_002301_150 Hb_002301_150 Hb_008013_050--Hb_002301_150 Hb_003502_060 Hb_003502_060 Hb_008013_050--Hb_003502_060 Hb_008013_050--Hb_003151_040 Hb_010098_050 Hb_010098_050 Hb_008013_050--Hb_010098_050 Hb_000030_030 Hb_000030_030 Hb_008013_050--Hb_000030_030 Hb_003918_010 Hb_003918_010 Hb_172426_040--Hb_003918_010 Hb_003787_010 Hb_003787_010 Hb_172426_040--Hb_003787_010 Hb_000020_060 Hb_000020_060 Hb_172426_040--Hb_000020_060 Hb_000982_090 Hb_000982_090 Hb_172426_040--Hb_000982_090 Hb_004116_190 Hb_004116_190 Hb_172426_040--Hb_004116_190 Hb_000215_110 Hb_000215_110 Hb_000373_070--Hb_000215_110 Hb_000373_070--Hb_005846_040 Hb_001163_050 Hb_001163_050 Hb_000373_070--Hb_001163_050 Hb_000331_550 Hb_000331_550 Hb_000373_070--Hb_000331_550 Hb_002078_350 Hb_002078_350 Hb_000373_070--Hb_002078_350 Hb_005846_040--Hb_000030_030 Hb_001245_100 Hb_001245_100 Hb_005846_040--Hb_001245_100 Hb_005846_040--Hb_003787_010 Hb_005846_040--Hb_004116_190 Hb_000152_500--Hb_000373_070 Hb_001470_030 Hb_001470_030 Hb_000152_500--Hb_001470_030 Hb_001133_120 Hb_001133_120 Hb_000152_500--Hb_001133_120 Hb_027380_050 Hb_027380_050 Hb_000152_500--Hb_027380_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.4817 11.9758 17.4639 16.5689 12.69 17.443
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.8033 27.3863 17.5644 12.3631 11.1311

CAGE analysis