Hb_006061_010

Information

Type -
Description -
Location Contig6061: 6373-7346
Sequence    

Annotation

kegg
ID rcu:RCOM_1465150
description hypothetical protein
nr
ID XP_011016731.1
description PREDICTED: phytosulfokines 4-like [Populus euphratica]
swissprot
ID Q9M2Y0
description Phytosulfokines 3 OS=Arabidopsis thaliana GN=PSK3 PE=2 SV=2
trembl
ID B9RLD2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1465150 PE=4 SV=1
Gene Ontology
ID GO:0005794
description phytosulfokines 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50772: 6563-7180
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006061_010 0.0 - - PREDICTED: phytosulfokines 4-like [Populus euphratica]
2 Hb_027892_010 0.216316455 transcription factor TF Family: bHLH LMYC1 [Hevea brasiliensis]
3 Hb_008014_070 0.222606763 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_004705_030 0.2281749716 - - conserved hypothetical protein [Ricinus communis]
5 Hb_019654_080 0.2344365125 - - -
6 Hb_013818_060 0.2345466729 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
7 Hb_000120_120 0.2421080295 - - PREDICTED: phosphoinositide phospholipase C 2 [Jatropha curcas]
8 Hb_000249_090 0.2481513012 - - PREDICTED: triacylglycerol lipase SDP1 [Jatropha curcas]
9 Hb_020096_020 0.2511201704 - - -
10 Hb_000548_040 0.2554440075 rubber biosynthesis Gene Name: CPT1 cis-prenyltransferase1 [Hevea brasiliensis]
11 Hb_143629_090 0.2719948879 - - PREDICTED: uncharacterized protein LOC105647358 [Jatropha curcas]
12 Hb_000249_130 0.2742408922 - - hypothetical protein RCOM_0254640 [Ricinus communis]
13 Hb_001799_080 0.2750641788 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
14 Hb_000684_370 0.2756984194 - - -
15 Hb_002027_300 0.2779365084 - - PREDICTED: rho GTPase-activating protein 2 [Jatropha curcas]
16 Hb_017124_010 0.2783627115 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001004_040 0.2808146905 - - conserved hypothetical protein [Ricinus communis]
18 Hb_150651_050 0.2821034149 - - phosphoglycerate mutase, putative [Ricinus communis]
19 Hb_004800_160 0.28422388 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
20 Hb_000699_120 0.2850742789 - - DNA-binding family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_006061_010 Hb_006061_010 Hb_027892_010 Hb_027892_010 Hb_006061_010--Hb_027892_010 Hb_008014_070 Hb_008014_070 Hb_006061_010--Hb_008014_070 Hb_004705_030 Hb_004705_030 Hb_006061_010--Hb_004705_030 Hb_019654_080 Hb_019654_080 Hb_006061_010--Hb_019654_080 Hb_013818_060 Hb_013818_060 Hb_006061_010--Hb_013818_060 Hb_000120_120 Hb_000120_120 Hb_006061_010--Hb_000120_120 Hb_000249_090 Hb_000249_090 Hb_027892_010--Hb_000249_090 Hb_000120_650 Hb_000120_650 Hb_027892_010--Hb_000120_650 Hb_027892_010--Hb_000120_120 Hb_027892_010--Hb_004705_030 Hb_000249_130 Hb_000249_130 Hb_027892_010--Hb_000249_130 Hb_027892_010--Hb_013818_060 Hb_020096_020 Hb_020096_020 Hb_008014_070--Hb_020096_020 Hb_001799_080 Hb_001799_080 Hb_008014_070--Hb_001799_080 Hb_008014_070--Hb_000120_120 Hb_163950_010 Hb_163950_010 Hb_008014_070--Hb_163950_010 Hb_002890_250 Hb_002890_250 Hb_008014_070--Hb_002890_250 Hb_004705_030--Hb_000249_090 Hb_000548_040 Hb_000548_040 Hb_004705_030--Hb_000548_040 Hb_012725_110 Hb_012725_110 Hb_004705_030--Hb_012725_110 Hb_000699_120 Hb_000699_120 Hb_004705_030--Hb_000699_120 Hb_075449_050 Hb_075449_050 Hb_004705_030--Hb_075449_050 Hb_003752_050 Hb_003752_050 Hb_019654_080--Hb_003752_050 Hb_130788_010 Hb_130788_010 Hb_019654_080--Hb_130788_010 Hb_000392_390 Hb_000392_390 Hb_019654_080--Hb_000392_390 Hb_003540_130 Hb_003540_130 Hb_019654_080--Hb_003540_130 Hb_001993_020 Hb_001993_020 Hb_019654_080--Hb_001993_020 Hb_013818_060--Hb_000120_120 Hb_013818_060--Hb_000249_130 Hb_013818_060--Hb_000249_090 Hb_013818_060--Hb_000120_650 Hb_143629_090 Hb_143629_090 Hb_013818_060--Hb_143629_090 Hb_000120_120--Hb_000249_130 Hb_000120_120--Hb_000120_650 Hb_004871_050 Hb_004871_050 Hb_000120_120--Hb_004871_050 Hb_000120_120--Hb_000249_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
79.8462 1.20344 0.317253 2.48144 28.5255 3.77157
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.5055 8.89185 96.6043 4.89497 0

CAGE analysis