Hb_006061_040

Information

Type -
Description -
Location Contig6061: 22746-32252
Sequence    

Annotation

kegg
ID rcu:RCOM_1465190
description menaquinone biosynthesis protein, putative (EC:3.1.1.1)
nr
ID XP_012080490.1
description PREDICTED: protein PHYLLO, chloroplastic [Jatropha curcas]
swissprot
ID Q15KI9
description Protein PHYLLO, chloroplastic OS=Arabidopsis thaliana GN=PHYLLO PE=2 SV=2
trembl
ID A0A067K5B7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11802 PE=3 SV=1
Gene Ontology
ID GO:0030976
description protein chloroplastic isoform x3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50776: 22901-26296 , PASA_asmbl_50777: 22984-26296
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006061_040 0.0 - - PREDICTED: protein PHYLLO, chloroplastic [Jatropha curcas]
2 Hb_146255_020 0.0674092387 - - PREDICTED: chromatin structure-remodeling complex protein BSH [Jatropha curcas]
3 Hb_004807_020 0.0974539665 - - PREDICTED: transcription initiation factor TFIID subunit 14b-like [Jatropha curcas]
4 Hb_001804_090 0.1023591918 - - PREDICTED: uracil phosphoribosyltransferase isoform X1 [Jatropha curcas]
5 Hb_000926_200 0.1054326004 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein RCD1 homolog isoform X1 [Jatropha curcas]
6 Hb_011053_010 0.1074323082 - - PREDICTED: uncharacterized protein LOC105631146 [Jatropha curcas]
7 Hb_002343_040 0.1075489786 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_001863_380 0.1094607188 - - PREDICTED: 14-3-3 protein 7 [Jatropha curcas]
9 Hb_007558_090 0.1108634942 - - PREDICTED: serine/threonine-protein kinase STN8, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_100790_010 0.11243367 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005946_040 0.1170969861 - - PREDICTED: probable protein phosphatase 2C 22 isoform X2 [Jatropha curcas]
12 Hb_018790_020 0.1181502926 - - protein kinase, putative [Ricinus communis]
13 Hb_002028_090 0.118192873 - - PREDICTED: E3 ubiquitin-protein ligase AIP2-like [Jatropha curcas]
14 Hb_004218_010 0.1186183221 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
15 Hb_000413_240 0.1187573024 - - PREDICTED: transcription factor ILR3-like isoform X2 [Jatropha curcas]
16 Hb_032202_100 0.1188078891 desease resistance Gene Name: ArsA_ATPase arsenical pump-driving atpase, putative [Ricinus communis]
17 Hb_029622_120 0.119041236 - - PREDICTED: polycomb group protein EMBRYONIC FLOWER 2 [Jatropha curcas]
18 Hb_000163_100 0.1191929143 - - PREDICTED: uncharacterized protein LOC105642537 [Jatropha curcas]
19 Hb_000120_890 0.1218707298 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
20 Hb_000003_170 0.1224630388 - - PREDICTED: reticulocalbin-2 [Jatropha curcas]

Gene co-expression network

sample Hb_006061_040 Hb_006061_040 Hb_146255_020 Hb_146255_020 Hb_006061_040--Hb_146255_020 Hb_004807_020 Hb_004807_020 Hb_006061_040--Hb_004807_020 Hb_001804_090 Hb_001804_090 Hb_006061_040--Hb_001804_090 Hb_000926_200 Hb_000926_200 Hb_006061_040--Hb_000926_200 Hb_011053_010 Hb_011053_010 Hb_006061_040--Hb_011053_010 Hb_002343_040 Hb_002343_040 Hb_006061_040--Hb_002343_040 Hb_146255_020--Hb_004807_020 Hb_146255_020--Hb_002343_040 Hb_001025_090 Hb_001025_090 Hb_146255_020--Hb_001025_090 Hb_001105_170 Hb_001105_170 Hb_146255_020--Hb_001105_170 Hb_146255_020--Hb_001804_090 Hb_004807_020--Hb_001025_090 Hb_006615_050 Hb_006615_050 Hb_004807_020--Hb_006615_050 Hb_001025_120 Hb_001025_120 Hb_004807_020--Hb_001025_120 Hb_171900_090 Hb_171900_090 Hb_004807_020--Hb_171900_090 Hb_018790_020 Hb_018790_020 Hb_004807_020--Hb_018790_020 Hb_000330_090 Hb_000330_090 Hb_001804_090--Hb_000330_090 Hb_007199_020 Hb_007199_020 Hb_001804_090--Hb_007199_020 Hb_001804_090--Hb_001105_170 Hb_001178_010 Hb_001178_010 Hb_001804_090--Hb_001178_010 Hb_002759_190 Hb_002759_190 Hb_001804_090--Hb_002759_190 Hb_000035_160 Hb_000035_160 Hb_000926_200--Hb_000035_160 Hb_040819_010 Hb_040819_010 Hb_000926_200--Hb_040819_010 Hb_032202_100 Hb_032202_100 Hb_000926_200--Hb_032202_100 Hb_004984_030 Hb_004984_030 Hb_000926_200--Hb_004984_030 Hb_053709_050 Hb_053709_050 Hb_000926_200--Hb_053709_050 Hb_002316_140 Hb_002316_140 Hb_000926_200--Hb_002316_140 Hb_000413_060 Hb_000413_060 Hb_011053_010--Hb_000413_060 Hb_000390_090 Hb_000390_090 Hb_011053_010--Hb_000390_090 Hb_000163_100 Hb_000163_100 Hb_011053_010--Hb_000163_100 Hb_011053_010--Hb_002343_040 Hb_011053_010--Hb_146255_020 Hb_001863_380 Hb_001863_380 Hb_002343_040--Hb_001863_380 Hb_012340_090 Hb_012340_090 Hb_002343_040--Hb_012340_090 Hb_002343_040--Hb_001105_170 Hb_002343_040--Hb_004807_020 Hb_002343_040--Hb_001025_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.1639 2.05648 7.44885 2.8342 1.65811 2.08096
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.59681 4.3753 2.4586 2.1675 2.56677

CAGE analysis