Hb_006064_010

Information

Type -
Description -
Location Contig6064: 28424-47179
Sequence    

Annotation

kegg
ID vvi:100266712
description uncharacterized LOC100266712
nr
ID XP_012065966.1
description PREDICTED: DDB1- and CUL4-associated factor 4 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L3S5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26654 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50786: 40125-46985 , PASA_asmbl_50787: 29019-40649
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006064_010 0.0 - - PREDICTED: DDB1- and CUL4-associated factor 4 [Jatropha curcas]
2 Hb_000690_130 0.047898859 - - PREDICTED: uncharacterized protein LOC105631771 [Jatropha curcas]
3 Hb_003728_080 0.0688752643 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like [Jatropha curcas]
4 Hb_000879_200 0.0691627054 - - PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
5 Hb_011139_030 0.0764371099 - - PREDICTED: E3 ubiquitin-protein ligase MBR2-like [Jatropha curcas]
6 Hb_007026_030 0.0768580729 - - rubisco subunit binding-protein alpha subunit, ruba, putative [Ricinus communis]
7 Hb_009646_030 0.0771912304 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000618_030 0.0794937038 - - PREDICTED: serine/threonine-protein kinase TOUSLED-like isoform X4 [Populus euphratica]
9 Hb_003044_100 0.0795624686 - - hypothetical protein F383_08446 [Gossypium arboreum]
10 Hb_000089_220 0.0804340382 - - PREDICTED: protein FAM133-like [Populus euphratica]
11 Hb_001444_010 0.0808622042 transcription factor TF Family: DDT PREDICTED: DDT domain-containing protein DDB_G0282237 isoform X1 [Jatropha curcas]
12 Hb_000367_130 0.0811676596 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000170_210 0.0813335269 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_006620_020 0.0838358982 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
15 Hb_000395_170 0.0844749695 - - PREDICTED: probable transcriptional regulatory protein At2g25830 [Jatropha curcas]
16 Hb_000392_300 0.0851475706 - - PREDICTED: RINT1-like protein MAG2 [Jatropha curcas]
17 Hb_002391_300 0.0851487494 - - hypothetical protein PHAVU_002G104100g [Phaseolus vulgaris]
18 Hb_004841_010 0.0853945032 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
19 Hb_000926_280 0.0856514155 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
20 Hb_007632_030 0.0861670505 - - PREDICTED: poly(A)-specific ribonuclease PARN isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_006064_010 Hb_006064_010 Hb_000690_130 Hb_000690_130 Hb_006064_010--Hb_000690_130 Hb_003728_080 Hb_003728_080 Hb_006064_010--Hb_003728_080 Hb_000879_200 Hb_000879_200 Hb_006064_010--Hb_000879_200 Hb_011139_030 Hb_011139_030 Hb_006064_010--Hb_011139_030 Hb_007026_030 Hb_007026_030 Hb_006064_010--Hb_007026_030 Hb_009646_030 Hb_009646_030 Hb_006064_010--Hb_009646_030 Hb_002687_130 Hb_002687_130 Hb_000690_130--Hb_002687_130 Hb_000373_240 Hb_000373_240 Hb_000690_130--Hb_000373_240 Hb_002391_300 Hb_002391_300 Hb_000690_130--Hb_002391_300 Hb_004182_040 Hb_004182_040 Hb_000690_130--Hb_004182_040 Hb_002805_270 Hb_002805_270 Hb_000690_130--Hb_002805_270 Hb_004369_020 Hb_004369_020 Hb_003728_080--Hb_004369_020 Hb_010139_040 Hb_010139_040 Hb_003728_080--Hb_010139_040 Hb_048937_040 Hb_048937_040 Hb_003728_080--Hb_048937_040 Hb_003728_080--Hb_009646_030 Hb_003665_060 Hb_003665_060 Hb_003728_080--Hb_003665_060 Hb_001926_030 Hb_001926_030 Hb_000879_200--Hb_001926_030 Hb_006620_020 Hb_006620_020 Hb_000879_200--Hb_006620_020 Hb_001595_030 Hb_001595_030 Hb_000879_200--Hb_001595_030 Hb_000853_230 Hb_000853_230 Hb_000879_200--Hb_000853_230 Hb_002518_280 Hb_002518_280 Hb_000879_200--Hb_002518_280 Hb_023386_020 Hb_023386_020 Hb_000879_200--Hb_023386_020 Hb_000618_030 Hb_000618_030 Hb_011139_030--Hb_000618_030 Hb_000820_170 Hb_000820_170 Hb_011139_030--Hb_000820_170 Hb_000025_110 Hb_000025_110 Hb_011139_030--Hb_000025_110 Hb_011139_030--Hb_048937_040 Hb_001675_180 Hb_001675_180 Hb_011139_030--Hb_001675_180 Hb_000794_050 Hb_000794_050 Hb_007026_030--Hb_000794_050 Hb_178968_100 Hb_178968_100 Hb_007026_030--Hb_178968_100 Hb_003044_100 Hb_003044_100 Hb_007026_030--Hb_003044_100 Hb_001575_100 Hb_001575_100 Hb_007026_030--Hb_001575_100 Hb_000368_020 Hb_000368_020 Hb_007026_030--Hb_000368_020 Hb_012098_110 Hb_012098_110 Hb_007026_030--Hb_012098_110 Hb_009646_030--Hb_006620_020 Hb_004055_150 Hb_004055_150 Hb_009646_030--Hb_004055_150 Hb_009646_030--Hb_001926_030 Hb_009646_030--Hb_000879_200 Hb_002997_080 Hb_002997_080 Hb_009646_030--Hb_002997_080 Hb_002078_020 Hb_002078_020 Hb_009646_030--Hb_002078_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.0661 4.982 9.16014 4.6575 14.2318 16.3975
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.40546 10.9488 9.05888 6.12585 7.3287

CAGE analysis