Hb_006065_020

Information

Type -
Description -
Location Contig6065: 39548-44133
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50790: 40334-41444 , PASA_asmbl_50791: 41586-42418
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006065_020 0.0 - - -
2 Hb_000392_300 0.0582313913 - - PREDICTED: RINT1-like protein MAG2 [Jatropha curcas]
3 Hb_000000_080 0.0662234898 - - lipoate-protein ligase B, putative [Ricinus communis]
4 Hb_005662_030 0.0739850686 - - protein with unknown function [Ricinus communis]
5 Hb_000089_220 0.0762678181 - - PREDICTED: protein FAM133-like [Populus euphratica]
6 Hb_000721_010 0.0837076381 - - conserved hypothetical protein [Ricinus communis]
7 Hb_006185_050 0.0840991029 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
8 Hb_001439_150 0.0863816528 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15340, mitochondrial [Jatropha curcas]
9 Hb_000030_010 0.0876324288 - - PREDICTED: uncharacterized protein LOC105632627 [Jatropha curcas]
10 Hb_006064_010 0.088559877 - - PREDICTED: DDB1- and CUL4-associated factor 4 [Jatropha curcas]
11 Hb_000465_470 0.0887023019 - - unknown [Picea sitchensis]
12 Hb_048937_040 0.0896858631 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
13 Hb_007951_060 0.090370072 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
14 Hb_009646_030 0.0909170689 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000046_300 0.0915688155 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
16 Hb_003642_060 0.0924213137 - - hypothetical protein RCOM_1189860 [Ricinus communis]
17 Hb_007547_010 0.0938766662 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
18 Hb_014720_160 0.0942840549 - - PREDICTED: anthranilate phosphoribosyltransferase, chloroplastic [Jatropha curcas]
19 Hb_000327_120 0.0956524004 - - FGFR1 oncogene partner, putative [Ricinus communis]
20 Hb_001575_100 0.0958379012 - - PREDICTED: NADPH:adrenodoxin oxidoreductase, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_006065_020 Hb_006065_020 Hb_000392_300 Hb_000392_300 Hb_006065_020--Hb_000392_300 Hb_000000_080 Hb_000000_080 Hb_006065_020--Hb_000000_080 Hb_005662_030 Hb_005662_030 Hb_006065_020--Hb_005662_030 Hb_000089_220 Hb_000089_220 Hb_006065_020--Hb_000089_220 Hb_000721_010 Hb_000721_010 Hb_006065_020--Hb_000721_010 Hb_006185_050 Hb_006185_050 Hb_006065_020--Hb_006185_050 Hb_000392_300--Hb_006185_050 Hb_048937_040 Hb_048937_040 Hb_000392_300--Hb_048937_040 Hb_000030_010 Hb_000030_010 Hb_000392_300--Hb_000030_010 Hb_000392_300--Hb_000089_220 Hb_002496_030 Hb_002496_030 Hb_000392_300--Hb_002496_030 Hb_001439_150 Hb_001439_150 Hb_000000_080--Hb_001439_150 Hb_168707_030 Hb_168707_030 Hb_000000_080--Hb_168707_030 Hb_000000_080--Hb_000030_010 Hb_000017_120 Hb_000017_120 Hb_000000_080--Hb_000017_120 Hb_007951_060 Hb_007951_060 Hb_000000_080--Hb_007951_060 Hb_001862_190 Hb_001862_190 Hb_005662_030--Hb_001862_190 Hb_000620_010 Hb_000620_010 Hb_005662_030--Hb_000620_010 Hb_000184_110 Hb_000184_110 Hb_005662_030--Hb_000184_110 Hb_000028_610 Hb_000028_610 Hb_005662_030--Hb_000028_610 Hb_001017_040 Hb_001017_040 Hb_005662_030--Hb_001017_040 Hb_003406_010 Hb_003406_010 Hb_000089_220--Hb_003406_010 Hb_000089_220--Hb_006185_050 Hb_003642_060 Hb_003642_060 Hb_000089_220--Hb_003642_060 Hb_003001_140 Hb_003001_140 Hb_000089_220--Hb_003001_140 Hb_003010_030 Hb_003010_030 Hb_000089_220--Hb_003010_030 Hb_000926_280 Hb_000926_280 Hb_000089_220--Hb_000926_280 Hb_001847_020 Hb_001847_020 Hb_000721_010--Hb_001847_020 Hb_185467_010 Hb_185467_010 Hb_000721_010--Hb_185467_010 Hb_000046_300 Hb_000046_300 Hb_000721_010--Hb_000046_300 Hb_000721_010--Hb_000000_080 Hb_000926_020 Hb_000926_020 Hb_000721_010--Hb_000926_020 Hb_001305_010 Hb_001305_010 Hb_006185_050--Hb_001305_010 Hb_000327_120 Hb_000327_120 Hb_006185_050--Hb_000327_120 Hb_001595_030 Hb_001595_030 Hb_006185_050--Hb_001595_030 Hb_003175_010 Hb_003175_010 Hb_006185_050--Hb_003175_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.7515 5.66968 7.06139 4.24526 16.1668 15.3013
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.01176 12.7648 11.9053 5.65616 5.67159

CAGE analysis