Hb_006076_010

Information

Type -
Description -
Location Contig6076: 9946-12546
Sequence    

Annotation

kegg
ID tcc:TCM_005826
description Cc-nbs-lrr resistance protein, putative isoform 1
nr
ID XP_012065631.1
description PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L582
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16874 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50808: 10040-10755 , PASA_asmbl_50809: 12008-12358
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006076_010 0.0 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
2 Hb_000116_300 0.1316007244 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_004968_100 0.1483175511 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
4 Hb_001946_410 0.1499697265 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
5 Hb_046198_010 0.1662763697 - - PREDICTED: NADPH-dependent pterin aldehyde reductase [Jatropha curcas]
6 Hb_000567_380 0.1704923364 - - ubiquitin specific protease 39 and snrnp assembly factor, putative [Ricinus communis]
7 Hb_000116_010 0.1841454471 - - isocitrate dehydrogenase, putative [Ricinus communis]
8 Hb_000445_040 0.185469199 - - PREDICTED: NAD kinase 2, chloroplastic [Jatropha curcas]
9 Hb_000143_030 0.1862574622 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
10 Hb_004785_140 0.1876598951 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X2 [Jatropha curcas]
11 Hb_000805_290 0.1892121115 - - PREDICTED: cytochrome P450 710A1-like [Jatropha curcas]
12 Hb_001221_170 0.1894335039 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50390, chloroplastic [Jatropha curcas]
13 Hb_001811_030 0.1897970932 - - Beta-ureidopropionase, putative [Ricinus communis]
14 Hb_001897_040 0.1912066633 - - 26S proteasome non-atpase regulatory subunit, putative [Ricinus communis]
15 Hb_002205_190 0.1922005612 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
16 Hb_003475_010 0.1948626803 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
17 Hb_000187_090 0.1963646742 - - PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]
18 Hb_001021_040 0.1966401819 - - PREDICTED: dephospho-CoA kinase-like [Jatropha curcas]
19 Hb_007632_220 0.1976946916 - - RNA-binding protein, putative [Ricinus communis]
20 Hb_013405_030 0.1990421487 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_006076_010 Hb_006076_010 Hb_000116_300 Hb_000116_300 Hb_006076_010--Hb_000116_300 Hb_004968_100 Hb_004968_100 Hb_006076_010--Hb_004968_100 Hb_001946_410 Hb_001946_410 Hb_006076_010--Hb_001946_410 Hb_046198_010 Hb_046198_010 Hb_006076_010--Hb_046198_010 Hb_000567_380 Hb_000567_380 Hb_006076_010--Hb_000567_380 Hb_000116_010 Hb_000116_010 Hb_006076_010--Hb_000116_010 Hb_000792_070 Hb_000792_070 Hb_000116_300--Hb_000792_070 Hb_000041_150 Hb_000041_150 Hb_000116_300--Hb_000041_150 Hb_013405_030 Hb_013405_030 Hb_000116_300--Hb_013405_030 Hb_001221_170 Hb_001221_170 Hb_000116_300--Hb_001221_170 Hb_000997_210 Hb_000997_210 Hb_000116_300--Hb_000997_210 Hb_004226_020 Hb_004226_020 Hb_004968_100--Hb_004226_020 Hb_003475_010 Hb_003475_010 Hb_004968_100--Hb_003475_010 Hb_000062_560 Hb_000062_560 Hb_004968_100--Hb_000062_560 Hb_004968_100--Hb_001221_170 Hb_002518_140 Hb_002518_140 Hb_004968_100--Hb_002518_140 Hb_002205_190 Hb_002205_190 Hb_001946_410--Hb_002205_190 Hb_001946_410--Hb_000567_380 Hb_001946_410--Hb_000116_010 Hb_008695_140 Hb_008695_140 Hb_001946_410--Hb_008695_140 Hb_000011_330 Hb_000011_330 Hb_001946_410--Hb_000011_330 Hb_004785_140 Hb_004785_140 Hb_001946_410--Hb_004785_140 Hb_000335_020 Hb_000335_020 Hb_046198_010--Hb_000335_020 Hb_046198_010--Hb_000011_330 Hb_001266_060 Hb_001266_060 Hb_046198_010--Hb_001266_060 Hb_046198_010--Hb_000567_380 Hb_000330_100 Hb_000330_100 Hb_046198_010--Hb_000330_100 Hb_000063_140 Hb_000063_140 Hb_046198_010--Hb_000063_140 Hb_000567_380--Hb_000011_330 Hb_000567_380--Hb_002205_190 Hb_000567_380--Hb_008695_140 Hb_003976_030 Hb_003976_030 Hb_000567_380--Hb_003976_030 Hb_012325_020 Hb_012325_020 Hb_000567_380--Hb_012325_020 Hb_050622_050 Hb_050622_050 Hb_000567_380--Hb_050622_050 Hb_006647_020 Hb_006647_020 Hb_000116_010--Hb_006647_020 Hb_000116_010--Hb_003976_030 Hb_000116_010--Hb_000063_140 Hb_001617_050 Hb_001617_050 Hb_000116_010--Hb_001617_050 Hb_001892_020 Hb_001892_020 Hb_000116_010--Hb_001892_020 Hb_004204_170 Hb_004204_170 Hb_000116_010--Hb_004204_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.43588 2.01668 3.98405 2.59623 10.0133 1.65773
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.54496 4.74361 17.8423 3.56681 4.44313

CAGE analysis