Hb_006076_020

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig6076: 23985-24719
Sequence    

Annotation

kegg
ID vvi:100251564
description putative disease resistance RPP13-like protein 1
nr
ID XP_010659153.1
description PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID A5C799
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042289 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50810: 23964-24772
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006076_020 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]
2 Hb_004531_090 0.123016412 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
3 Hb_002400_270 0.1282727311 - - PREDICTED: probable sucrose-phosphate synthase 1 isoform X1 [Jatropha curcas]
4 Hb_001846_060 0.1323451871 - - hypothetical protein RCOM_0992860 [Ricinus communis]
5 Hb_011457_110 0.1348956925 - - PREDICTED: protein NETWORKED 1D [Jatropha curcas]
6 Hb_009421_030 0.1366203506 - - PREDICTED: uncharacterized protein LOC105639700 [Jatropha curcas]
7 Hb_000291_120 0.1374879736 transcription factor TF Family: ARF PREDICTED: auxin response factor 17 [Jatropha curcas]
8 Hb_000173_370 0.1383598751 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
9 Hb_011644_020 0.1415900674 - - PREDICTED: choline-phosphate cytidylyltransferase 2 [Vitis vinifera]
10 Hb_000134_360 0.1446547188 - - PREDICTED: protein gar2 [Jatropha curcas]
11 Hb_000540_140 0.1450703582 - - zinc binding dehydrogenase, putative [Ricinus communis]
12 Hb_000573_040 0.1451972593 - - hypothetical protein JCGZ_19524 [Jatropha curcas]
13 Hb_005228_120 0.1459110562 - - phospholipase d beta, putative [Ricinus communis]
14 Hb_000250_080 0.1459294497 - - hypothetical protein B456_003G1510001, partial [Gossypium raimondii]
15 Hb_003666_050 0.1463770107 - - PREDICTED: NASP-related protein sim3 [Jatropha curcas]
16 Hb_007441_070 0.1468402275 - - hypothetical protein PRUPE_ppa004494mg [Prunus persica]
17 Hb_000940_040 0.1497317924 - - PREDICTED: protein XAP5 CIRCADIAN TIMEKEEPER isoform X1 [Jatropha curcas]
18 Hb_000088_180 0.1503085198 - - hypothetical protein JCGZ_11198 [Jatropha curcas]
19 Hb_011316_110 0.1505574377 - - PREDICTED: receptor-like serine/threonine-protein kinase At4g25390 [Jatropha curcas]
20 Hb_002025_140 0.1528996817 - - PREDICTED: UBX domain-containing protein 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_006076_020 Hb_006076_020 Hb_004531_090 Hb_004531_090 Hb_006076_020--Hb_004531_090 Hb_002400_270 Hb_002400_270 Hb_006076_020--Hb_002400_270 Hb_001846_060 Hb_001846_060 Hb_006076_020--Hb_001846_060 Hb_011457_110 Hb_011457_110 Hb_006076_020--Hb_011457_110 Hb_009421_030 Hb_009421_030 Hb_006076_020--Hb_009421_030 Hb_000291_120 Hb_000291_120 Hb_006076_020--Hb_000291_120 Hb_000779_040 Hb_000779_040 Hb_004531_090--Hb_000779_040 Hb_002025_140 Hb_002025_140 Hb_004531_090--Hb_002025_140 Hb_004531_090--Hb_000291_120 Hb_000211_090 Hb_000211_090 Hb_004531_090--Hb_000211_090 Hb_000573_040 Hb_000573_040 Hb_004531_090--Hb_000573_040 Hb_001034_020 Hb_001034_020 Hb_004531_090--Hb_001034_020 Hb_000327_240 Hb_000327_240 Hb_002400_270--Hb_000327_240 Hb_011316_110 Hb_011316_110 Hb_002400_270--Hb_011316_110 Hb_000742_250 Hb_000742_250 Hb_002400_270--Hb_000742_250 Hb_002818_040 Hb_002818_040 Hb_002400_270--Hb_002818_040 Hb_000369_060 Hb_000369_060 Hb_002400_270--Hb_000369_060 Hb_001416_040 Hb_001416_040 Hb_002400_270--Hb_001416_040 Hb_001846_060--Hb_000742_250 Hb_001846_060--Hb_002400_270 Hb_001846_060--Hb_000369_060 Hb_011644_020 Hb_011644_020 Hb_001846_060--Hb_011644_020 Hb_007786_010 Hb_007786_010 Hb_001846_060--Hb_007786_010 Hb_001846_060--Hb_011316_110 Hb_000152_890 Hb_000152_890 Hb_011457_110--Hb_000152_890 Hb_000367_290 Hb_000367_290 Hb_011457_110--Hb_000367_290 Hb_017168_010 Hb_017168_010 Hb_011457_110--Hb_017168_010 Hb_024399_010 Hb_024399_010 Hb_011457_110--Hb_024399_010 Hb_000161_030 Hb_000161_030 Hb_011457_110--Hb_000161_030 Hb_005314_010 Hb_005314_010 Hb_011457_110--Hb_005314_010 Hb_001486_120 Hb_001486_120 Hb_009421_030--Hb_001486_120 Hb_009421_030--Hb_000291_120 Hb_001582_030 Hb_001582_030 Hb_009421_030--Hb_001582_030 Hb_009421_030--Hb_000367_290 Hb_005295_040 Hb_005295_040 Hb_009421_030--Hb_005295_040 Hb_009421_030--Hb_000152_890 Hb_000035_400 Hb_000035_400 Hb_000291_120--Hb_000035_400 Hb_004032_350 Hb_004032_350 Hb_000291_120--Hb_004032_350 Hb_073171_080 Hb_073171_080 Hb_000291_120--Hb_073171_080 Hb_004724_360 Hb_004724_360 Hb_000291_120--Hb_004724_360 Hb_000327_310 Hb_000327_310 Hb_000291_120--Hb_000327_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.94049 1.5577 0.411264 1.08375 12.4742 7.13474
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.26923 1.07044 3.30712 1.37638 2.60261

CAGE analysis