Hb_006083_060

Information

Type -
Description -
Location Contig6083: 52043-72716
Sequence    

Annotation

kegg
ID rcu:RCOM_0813710
description alcohol dehydrogenase, putative (EC:1.1.1.141 1.6.5.5)
nr
ID XP_012066888.1
description PREDICTED: zinc-binding alcohol dehydrogenase domain-containing protein 2-like [Jatropha curcas]
swissprot
ID Q8BGC4
description Zinc-binding alcohol dehydrogenase domain-containing protein 2 OS=Mus musculus GN=Zadh2 PE=1 SV=1
trembl
ID B9RYJ6
description Alcohol dehydrogenase, putative OS=Ricinus communis GN=RCOM_0813710 PE=4 SV=1
Gene Ontology
ID GO:0003960
description zinc-binding alcohol dehydrogenase domain-containing protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006083_060 0.0 - - PREDICTED: zinc-binding alcohol dehydrogenase domain-containing protein 2-like [Jatropha curcas]
2 Hb_004525_070 0.2107027097 - - abhydrolase domain containing, putative [Ricinus communis]
3 Hb_001952_130 0.2107893042 - - PREDICTED: protein EXORDIUM-like 2 [Jatropha curcas]
4 Hb_000106_020 0.2126629961 - - PREDICTED: protein TOPLESS isoform X1 [Jatropha curcas]
5 Hb_007333_030 0.2213298093 - - -
6 Hb_000077_220 0.2252770866 - - PREDICTED: uncharacterized protein LOC105647046 [Jatropha curcas]
7 Hb_003097_080 0.2253697646 - - hypothetical protein JCGZ_24481 [Jatropha curcas]
8 Hb_000165_110 0.2263887179 - - unknown [Medicago truncatula]
9 Hb_143960_010 0.2271452511 - - -
10 Hb_000732_170 0.2298836248 - - PREDICTED: putative PAP-specific phosphatase, mitochondrial isoform X1 [Jatropha curcas]
11 Hb_004254_110 0.2337795038 - - -
12 Hb_000406_060 0.2362488598 - - hypothetical protein CICLE_v10000115mg [Citrus clementina]
13 Hb_000300_300 0.2401153399 transcription factor TF Family: SET hypothetical protein JCGZ_02677 [Jatropha curcas]
14 Hb_033554_020 0.2429429774 transcription factor TF Family: BES1 PREDICTED: beta-amylase 8 [Jatropha curcas]
15 Hb_000809_180 0.2433957012 - - -
16 Hb_009265_050 0.2451655455 - - PREDICTED: glucosidase 2 subunit beta [Jatropha curcas]
17 Hb_011639_040 0.2467231358 - - hypothetical protein M569_08265, partial [Genlisea aurea]
18 Hb_001807_030 0.2470922685 - - PREDICTED: CDT1-like protein b [Jatropha curcas]
19 Hb_025194_020 0.2499512658 - - PREDICTED: uncharacterized protein C1F8.04c-like isoform X1 [Jatropha curcas]
20 Hb_000453_140 0.2506282219 - - hypothetical protein POPTR_0009s02600g [Populus trichocarpa]

Gene co-expression network

sample Hb_006083_060 Hb_006083_060 Hb_004525_070 Hb_004525_070 Hb_006083_060--Hb_004525_070 Hb_001952_130 Hb_001952_130 Hb_006083_060--Hb_001952_130 Hb_000106_020 Hb_000106_020 Hb_006083_060--Hb_000106_020 Hb_007333_030 Hb_007333_030 Hb_006083_060--Hb_007333_030 Hb_000077_220 Hb_000077_220 Hb_006083_060--Hb_000077_220 Hb_003097_080 Hb_003097_080 Hb_006083_060--Hb_003097_080 Hb_001662_040 Hb_001662_040 Hb_004525_070--Hb_001662_040 Hb_009265_050 Hb_009265_050 Hb_004525_070--Hb_009265_050 Hb_033554_020 Hb_033554_020 Hb_004525_070--Hb_033554_020 Hb_002291_060 Hb_002291_060 Hb_004525_070--Hb_002291_060 Hb_009659_030 Hb_009659_030 Hb_004525_070--Hb_009659_030 Hb_001373_160 Hb_001373_160 Hb_004525_070--Hb_001373_160 Hb_000984_250 Hb_000984_250 Hb_001952_130--Hb_000984_250 Hb_003388_050 Hb_003388_050 Hb_001952_130--Hb_003388_050 Hb_001675_120 Hb_001675_120 Hb_001952_130--Hb_001675_120 Hb_001952_130--Hb_004525_070 Hb_006915_020 Hb_006915_020 Hb_001952_130--Hb_006915_020 Hb_031527_070 Hb_031527_070 Hb_001952_130--Hb_031527_070 Hb_000122_080 Hb_000122_080 Hb_000106_020--Hb_000122_080 Hb_000106_020--Hb_033554_020 Hb_000106_020--Hb_001373_160 Hb_000406_060 Hb_000406_060 Hb_000106_020--Hb_000406_060 Hb_098315_090 Hb_098315_090 Hb_000106_020--Hb_098315_090 Hb_143960_010 Hb_143960_010 Hb_000106_020--Hb_143960_010 Hb_104812_010 Hb_104812_010 Hb_007333_030--Hb_104812_010 Hb_001221_140 Hb_001221_140 Hb_007333_030--Hb_001221_140 Hb_000732_170 Hb_000732_170 Hb_007333_030--Hb_000732_170 Hb_003059_010 Hb_003059_010 Hb_007333_030--Hb_003059_010 Hb_000574_360 Hb_000574_360 Hb_007333_030--Hb_000574_360 Hb_007333_030--Hb_000077_220 Hb_000077_220--Hb_001221_140 Hb_002814_060 Hb_002814_060 Hb_000077_220--Hb_002814_060 Hb_000077_220--Hb_143960_010 Hb_000599_170 Hb_000599_170 Hb_000077_220--Hb_000599_170 Hb_001508_020 Hb_001508_020 Hb_000077_220--Hb_001508_020 Hb_000077_220--Hb_000106_020 Hb_000453_140 Hb_000453_140 Hb_003097_080--Hb_000453_140 Hb_013818_030 Hb_013818_030 Hb_003097_080--Hb_013818_030 Hb_027380_030 Hb_027380_030 Hb_003097_080--Hb_027380_030 Hb_000076_260 Hb_000076_260 Hb_003097_080--Hb_000076_260 Hb_001504_040 Hb_001504_040 Hb_003097_080--Hb_001504_040 Hb_001307_080 Hb_001307_080 Hb_003097_080--Hb_001307_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.25528 0.245967 0.334648 0.0878332 0.508272 0.175711
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.129545 0.493911 0.0961854

CAGE analysis