Hb_006091_030

Information

Type desease resistance
Description Gene Name: AAA
Location Contig6091: 22185-29838
Sequence    

Annotation

kegg
ID rcu:RCOM_0506060
description Protein cdcH, putative (EC:3.6.4.3)
nr
ID XP_012078981.1
description PREDICTED: cell division control protein 48 homolog C-like isoform X1 [Jatropha curcas]
swissprot
ID Q9SS94
description Cell division control protein 48 homolog C OS=Arabidopsis thaliana GN=CDC48C PE=2 SV=2
trembl
ID B9S9N8
description Protein cdcH, putative OS=Ricinus communis GN=RCOM_0506060 PE=3 SV=1
Gene Ontology
ID GO:0005524
description cell division control protein 48 c isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50891: 22401-29756 , PASA_asmbl_50892: 22713-29756
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006091_030 0.0 desease resistance Gene Name: AAA PREDICTED: cell division control protein 48 homolog C-like isoform X1 [Jatropha curcas]
2 Hb_000490_030 0.0680162413 - - DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
3 Hb_000358_080 0.0801754061 - - Ribonuclease 3 [Gossypium arboreum]
4 Hb_002874_070 0.0814827337 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]
5 Hb_000016_110 0.0820017271 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38010 [Jatropha curcas]
6 Hb_000413_130 0.08277118 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
7 Hb_000078_130 0.0840926036 - - -
8 Hb_000497_140 0.0842353102 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
9 Hb_001040_170 0.0842448769 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial isoform X1 [Jatropha curcas]
10 Hb_000369_060 0.0855744972 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
11 Hb_029281_010 0.0886856854 - - hypothetical protein JCGZ_04025 [Jatropha curcas]
12 Hb_003581_140 0.0887133324 - - PREDICTED: hypersensitive-induced response protein 1-like [Nelumbo nucifera]
13 Hb_000107_100 0.0897952629 - - hypothetical protein JCGZ_16208 [Jatropha curcas]
14 Hb_000086_590 0.0920859284 - - PREDICTED: putative uncharacterized protein At4g01020, chloroplastic [Jatropha curcas]
15 Hb_004440_100 0.0923430649 - - PREDICTED: transmembrane protein 53 [Jatropha curcas]
16 Hb_001936_050 0.0937533092 - - PREDICTED: pentatricopeptide repeat-containing protein At4g08210-like [Prunus mume]
17 Hb_000161_030 0.0944256961 transcription factor TF Family: TCP PREDICTED: transcription factor TCP8 [Jatropha curcas]
18 Hb_002818_040 0.0977697766 - - tRNA synthetase-related family protein [Populus trichocarpa]
19 Hb_001584_110 0.1025784028 - - PREDICTED: importin subunit alpha-4 isoform X2 [Jatropha curcas]
20 Hb_000088_010 0.1033782239 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_006091_030 Hb_006091_030 Hb_000490_030 Hb_000490_030 Hb_006091_030--Hb_000490_030 Hb_000358_080 Hb_000358_080 Hb_006091_030--Hb_000358_080 Hb_002874_070 Hb_002874_070 Hb_006091_030--Hb_002874_070 Hb_000016_110 Hb_000016_110 Hb_006091_030--Hb_000016_110 Hb_000413_130 Hb_000413_130 Hb_006091_030--Hb_000413_130 Hb_000078_130 Hb_000078_130 Hb_006091_030--Hb_000078_130 Hb_001936_050 Hb_001936_050 Hb_000490_030--Hb_001936_050 Hb_029281_010 Hb_029281_010 Hb_000490_030--Hb_029281_010 Hb_000490_030--Hb_000358_080 Hb_000340_510 Hb_000340_510 Hb_000490_030--Hb_000340_510 Hb_000490_030--Hb_002874_070 Hb_007943_080 Hb_007943_080 Hb_000358_080--Hb_007943_080 Hb_000358_080--Hb_001936_050 Hb_000138_040 Hb_000138_040 Hb_000358_080--Hb_000138_040 Hb_010710_010 Hb_010710_010 Hb_000358_080--Hb_010710_010 Hb_001584_110 Hb_001584_110 Hb_002874_070--Hb_001584_110 Hb_004440_100 Hb_004440_100 Hb_002874_070--Hb_004440_100 Hb_185467_020 Hb_185467_020 Hb_002874_070--Hb_185467_020 Hb_002928_060 Hb_002928_060 Hb_002874_070--Hb_002928_060 Hb_022256_040 Hb_022256_040 Hb_002874_070--Hb_022256_040 Hb_002874_070--Hb_001936_050 Hb_005399_010 Hb_005399_010 Hb_000016_110--Hb_005399_010 Hb_000497_140 Hb_000497_140 Hb_000016_110--Hb_000497_140 Hb_022288_010 Hb_022288_010 Hb_000016_110--Hb_022288_010 Hb_041091_010 Hb_041091_010 Hb_000016_110--Hb_041091_010 Hb_012016_020 Hb_012016_020 Hb_000016_110--Hb_012016_020 Hb_001431_070 Hb_001431_070 Hb_000413_130--Hb_001431_070 Hb_005314_010 Hb_005314_010 Hb_000413_130--Hb_005314_010 Hb_000367_290 Hb_000367_290 Hb_000413_130--Hb_000367_290 Hb_002725_070 Hb_002725_070 Hb_000413_130--Hb_002725_070 Hb_000413_130--Hb_029281_010 Hb_003581_140 Hb_003581_140 Hb_000078_130--Hb_003581_140 Hb_001454_060 Hb_001454_060 Hb_000078_130--Hb_001454_060 Hb_002014_080 Hb_002014_080 Hb_000078_130--Hb_002014_080 Hb_000078_130--Hb_000490_030 Hb_000230_330 Hb_000230_330 Hb_000078_130--Hb_000230_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
83.3208 28.6514 10.0325 9.20473 110.726 104.508
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.135 28.1726 87.4973 30.9675 13.1329

CAGE analysis