Hb_006106_020

Information

Type -
Description -
Location Contig6106: 52724-53527
Sequence    

Annotation

kegg
ID rcu:RCOM_0554190
description ring finger protein, putative
nr
ID XP_002525140.1
description ring finger protein, putative [Ricinus communis]
swissprot
ID Q9SLC3
description E3 ubiquitin-protein ligase ATL41 OS=Arabidopsis thaliana GN=ATL41 PE=1 SV=1
trembl
ID B9SGM1
description Ring finger protein, putative OS=Ricinus communis GN=RCOM_0554190 PE=4 SV=1
Gene Ontology
ID GO:0005515
description e3 ubiquitin-protein ligase atl41-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006106_020 0.0 - - ring finger protein, putative [Ricinus communis]
2 Hb_005000_220 0.127637299 - - gulonolactone oxidase, putative [Ricinus communis]
3 Hb_000101_060 0.1542467323 - - -
4 Hb_008503_020 0.1567408399 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
5 Hb_002553_080 0.1613553355 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF096-like [Eucalyptus grandis]
6 Hb_012702_020 0.161409705 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
7 Hb_004162_040 0.162675033 - - PREDICTED: lysosomal Pro-X carboxypeptidase-like [Crassostrea gigas]
8 Hb_001709_070 0.1628699778 - - carbohydrate binding protein, putative [Ricinus communis]
9 Hb_008020_010 0.1663882824 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like [Jatropha curcas]
10 Hb_001489_030 0.1687762395 - - PREDICTED: protein NRT1/ PTR FAMILY 4.6 [Jatropha curcas]
11 Hb_002917_030 0.1687860349 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase HSL2 [Setaria italica]
12 Hb_008225_100 0.1720917341 - - -
13 Hb_003085_050 0.1725376107 - - Polygalacturonase non-catalytic subunit AroGP3 precursor, putative [Ricinus communis]
14 Hb_157122_010 0.1728899231 - - hypothetical protein JCGZ_21614 [Jatropha curcas]
15 Hb_015912_010 0.1729890455 - - cytochrome P450, putative [Ricinus communis]
16 Hb_017987_040 0.1733220404 transcription factor TF Family: MYB hypothetical protein POPTR_0002s11440g [Populus trichocarpa]
17 Hb_124385_010 0.1745964545 - - hypothetical protein JCGZ_13882 [Jatropha curcas]
18 Hb_007666_040 0.1759621595 - - PREDICTED: ent-kaur-16-ene synthase, chloroplastic-like [Jatropha curcas]
19 Hb_012053_030 0.1778344061 - - PREDICTED: GDSL esterase/lipase At5g22810 [Jatropha curcas]
20 Hb_079158_010 0.1815120121 - - PREDICTED: sperm acrosomal protein FSA-ACR.1-like [Jatropha curcas]

Gene co-expression network

sample Hb_006106_020 Hb_006106_020 Hb_005000_220 Hb_005000_220 Hb_006106_020--Hb_005000_220 Hb_000101_060 Hb_000101_060 Hb_006106_020--Hb_000101_060 Hb_008503_020 Hb_008503_020 Hb_006106_020--Hb_008503_020 Hb_002553_080 Hb_002553_080 Hb_006106_020--Hb_002553_080 Hb_012702_020 Hb_012702_020 Hb_006106_020--Hb_012702_020 Hb_004162_040 Hb_004162_040 Hb_006106_020--Hb_004162_040 Hb_017987_040 Hb_017987_040 Hb_005000_220--Hb_017987_040 Hb_000322_200 Hb_000322_200 Hb_005000_220--Hb_000322_200 Hb_007666_040 Hb_007666_040 Hb_005000_220--Hb_007666_040 Hb_001489_030 Hb_001489_030 Hb_005000_220--Hb_001489_030 Hb_002917_030 Hb_002917_030 Hb_005000_220--Hb_002917_030 Hb_000101_060--Hb_012702_020 Hb_015912_010 Hb_015912_010 Hb_000101_060--Hb_015912_010 Hb_166257_010 Hb_166257_010 Hb_000101_060--Hb_166257_010 Hb_003752_130 Hb_003752_130 Hb_000101_060--Hb_003752_130 Hb_009297_010 Hb_009297_010 Hb_000101_060--Hb_009297_010 Hb_000101_060--Hb_002553_080 Hb_008503_020--Hb_001489_030 Hb_001709_070 Hb_001709_070 Hb_008503_020--Hb_001709_070 Hb_003086_200 Hb_003086_200 Hb_008503_020--Hb_003086_200 Hb_012053_030 Hb_012053_030 Hb_008503_020--Hb_012053_030 Hb_001864_010 Hb_001864_010 Hb_008503_020--Hb_001864_010 Hb_008053_070 Hb_008053_070 Hb_008503_020--Hb_008053_070 Hb_003085_050 Hb_003085_050 Hb_002553_080--Hb_003085_050 Hb_157122_010 Hb_157122_010 Hb_002553_080--Hb_157122_010 Hb_002766_040 Hb_002766_040 Hb_002553_080--Hb_002766_040 Hb_007735_010 Hb_007735_010 Hb_002553_080--Hb_007735_010 Hb_001168_080 Hb_001168_080 Hb_002553_080--Hb_001168_080 Hb_005550_070 Hb_005550_070 Hb_002553_080--Hb_005550_070 Hb_012702_020--Hb_015912_010 Hb_012702_020--Hb_003752_130 Hb_008111_020 Hb_008111_020 Hb_012702_020--Hb_008111_020 Hb_002157_180 Hb_002157_180 Hb_012702_020--Hb_002157_180 Hb_012702_020--Hb_166257_010 Hb_004162_040--Hb_001709_070 Hb_124385_010 Hb_124385_010 Hb_004162_040--Hb_124385_010 Hb_120268_010 Hb_120268_010 Hb_004162_040--Hb_120268_010 Hb_004162_040--Hb_008503_020 Hb_000221_170 Hb_000221_170 Hb_004162_040--Hb_000221_170 Hb_000203_060 Hb_000203_060 Hb_004162_040--Hb_000203_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.2816 0.34086 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.10543 0 2.432 0.105871

CAGE analysis