Hb_006111_040

Information

Type -
Description -
Location Contig6111: 41065-44991
Sequence    

Annotation

kegg
ID cmo:103485923
description uncharacterized LOC103485923
nr
ID XP_008441928.1
description PREDICTED: uncharacterized protein LOC103485923 [Cucumis melo]
swissprot
ID P92519
description Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg00810 PE=4 SV=1
trembl
ID U5FUS7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s01952g PE=4 SV=1
Gene Ontology
ID GO:0003676
description PREDICTED: uncharacterized protein LOC103485923

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006111_040 0.0 - - PREDICTED: uncharacterized protein LOC103485923 [Cucumis melo]
2 Hb_151401_010 0.1832606722 - - -
3 Hb_002529_070 0.188108791 - - PREDICTED: putative late blight resistance protein homolog R1B-19 [Pyrus x bretschneideri]
4 Hb_000011_470 0.1906369219 - - PREDICTED: uncharacterized protein LOC103485923 [Cucumis melo]
5 Hb_001981_020 0.1917346019 - - PREDICTED: xanthine dehydrogenase 1-like isoform X1 [Populus euphratica]
6 Hb_007533_050 0.1973546426 - - -
7 Hb_006455_020 0.198429634 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
8 Hb_049285_010 0.2002214178 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
9 Hb_040473_010 0.2037915747 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
10 Hb_000567_270 0.2039809148 - - hypothetical protein L484_017162 [Morus notabilis]
11 Hb_001221_350 0.2041324397 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000100_110 0.2071426197 - - -
13 Hb_003746_020 0.208959436 - - PREDICTED: magnesium-chelatase subunit ChlH, chloroplastic [Gossypium raimondii]
14 Hb_003311_020 0.2103221055 - - conserved hypothetical protein [Ricinus communis]
15 Hb_019654_170 0.2113384079 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 9 [Jatropha curcas]
16 Hb_035651_010 0.212095473 - - receptor-kinase, putative [Ricinus communis]
17 Hb_032016_010 0.2120970788 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040-like isoform X1 [Citrus sinensis]
18 Hb_010589_030 0.2124466108 - - PREDICTED: proline-rich receptor-like protein kinase PERK2 [Jatropha curcas]
19 Hb_009851_090 0.2136522074 - - Protein ABIL2, putative [Ricinus communis]
20 Hb_002200_100 0.2136965488 - - PREDICTED: pathogen-related protein-like [Jatropha curcas]

Gene co-expression network

sample Hb_006111_040 Hb_006111_040 Hb_151401_010 Hb_151401_010 Hb_006111_040--Hb_151401_010 Hb_002529_070 Hb_002529_070 Hb_006111_040--Hb_002529_070 Hb_000011_470 Hb_000011_470 Hb_006111_040--Hb_000011_470 Hb_001981_020 Hb_001981_020 Hb_006111_040--Hb_001981_020 Hb_007533_050 Hb_007533_050 Hb_006111_040--Hb_007533_050 Hb_006455_020 Hb_006455_020 Hb_006111_040--Hb_006455_020 Hb_000432_020 Hb_000432_020 Hb_151401_010--Hb_000432_020 Hb_151401_010--Hb_007533_050 Hb_144838_010 Hb_144838_010 Hb_151401_010--Hb_144838_010 Hb_003414_040 Hb_003414_040 Hb_151401_010--Hb_003414_040 Hb_003311_020 Hb_003311_020 Hb_151401_010--Hb_003311_020 Hb_093388_010 Hb_093388_010 Hb_151401_010--Hb_093388_010 Hb_002016_130 Hb_002016_130 Hb_002529_070--Hb_002016_130 Hb_009848_060 Hb_009848_060 Hb_002529_070--Hb_009848_060 Hb_030885_010 Hb_030885_010 Hb_002529_070--Hb_030885_010 Hb_001005_040 Hb_001005_040 Hb_002529_070--Hb_001005_040 Hb_170878_020 Hb_170878_020 Hb_002529_070--Hb_170878_020 Hb_004052_060 Hb_004052_060 Hb_002529_070--Hb_004052_060 Hb_000405_010 Hb_000405_010 Hb_000011_470--Hb_000405_010 Hb_029238_030 Hb_029238_030 Hb_000011_470--Hb_029238_030 Hb_011892_010 Hb_011892_010 Hb_000011_470--Hb_011892_010 Hb_011931_090 Hb_011931_090 Hb_000011_470--Hb_011931_090 Hb_054127_020 Hb_054127_020 Hb_000011_470--Hb_054127_020 Hb_000011_470--Hb_151401_010 Hb_003462_170 Hb_003462_170 Hb_001981_020--Hb_003462_170 Hb_010964_030 Hb_010964_030 Hb_001981_020--Hb_010964_030 Hb_030987_010 Hb_030987_010 Hb_001981_020--Hb_030987_010 Hb_125116_020 Hb_125116_020 Hb_001981_020--Hb_125116_020 Hb_062192_050 Hb_062192_050 Hb_001981_020--Hb_062192_050 Hb_000907_050 Hb_000907_050 Hb_001981_020--Hb_000907_050 Hb_032016_010 Hb_032016_010 Hb_007533_050--Hb_032016_010 Hb_007533_050--Hb_000432_020 Hb_007533_050--Hb_003311_020 Hb_000567_270 Hb_000567_270 Hb_007533_050--Hb_000567_270 Hb_049285_010 Hb_049285_010 Hb_007533_050--Hb_049285_010 Hb_007533_050--Hb_006455_020 Hb_020831_070 Hb_020831_070 Hb_006455_020--Hb_020831_070 Hb_000476_030 Hb_000476_030 Hb_006455_020--Hb_000476_030 Hb_005678_030 Hb_005678_030 Hb_006455_020--Hb_005678_030 Hb_000644_020 Hb_000644_020 Hb_006455_020--Hb_000644_020 Hb_000522_030 Hb_000522_030 Hb_006455_020--Hb_000522_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00784923 0.0129357 0.018067 0.0232765 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0178154 0.0140187 0 0.0723732 0.417104

CAGE analysis