Hb_006111_050

Information

Type transcription factor
Description TF Family: AP2
Location Contig6111: 48044-53048
Sequence    

Annotation

kegg
ID rcu:RCOM_1077530
description Protein AINTEGUMENTA, putative (EC:1.3.1.74)
nr
ID XP_002514802.1
description Protein AINTEGUMENTA, putative [Ricinus communis]
swissprot
ID Q8LSN2
description AP2-like ethylene-responsive transcription factor BBM2 OS=Brassica napus GN=BBM2 PE=2 SV=1
trembl
ID B9RM33
description Protein AINTEGUMENTA, putative OS=Ricinus communis GN=RCOM_1077530 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ap2-like ethylene-responsive transcription factor bbm2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006111_050 0.0 transcription factor TF Family: AP2 Protein AINTEGUMENTA, putative [Ricinus communis]
2 Hb_000172_040 0.0020808923 - - Tetratricopeptide repeat protein, putative [Ricinus communis]
3 Hb_126871_010 0.002506623 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
4 Hb_009615_140 0.0028205785 - - PREDICTED: alpha-galactosidase-like isoform X2 [Pyrus x bretschneideri]
5 Hb_004881_090 0.0042734647 - - hypothetical protein POPTR_0002s06050g [Populus trichocarpa]
6 Hb_039046_010 0.0044670317 - - PREDICTED: uncharacterized protein LOC105644040 isoform X2 [Jatropha curcas]
7 Hb_000834_120 0.0067545214 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP8 [Populus euphratica]
8 Hb_000373_090 0.0081398842 - - PREDICTED: abscisic acid 8'-hydroxylase 3-like [Prunus mume]
9 Hb_003486_040 0.0084799827 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
10 Hb_000049_320 0.0094252675 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA5 [Jatropha curcas]
11 Hb_004324_180 0.0096854923 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_008895_010 0.0110279108 - - conserved hypothetical protein [Ricinus communis]
13 Hb_008686_050 0.0142325626 - - -
14 Hb_176760_010 0.01938499 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
15 Hb_003914_040 0.0263277781 - - hypothetical protein EUGRSUZ_H02626 [Eucalyptus grandis]
16 Hb_007040_020 0.0263353327 - - -
17 Hb_007058_020 0.0266092406 - - -
18 Hb_000295_150 0.0271365541 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
19 Hb_001926_060 0.0275879399 - - PREDICTED: uncharacterized protein LOC105649615 isoform X2 [Jatropha curcas]
20 Hb_163180_010 0.0286910841 - - hypothetical protein JCGZ_26658 [Jatropha curcas]

Gene co-expression network

sample Hb_006111_050 Hb_006111_050 Hb_000172_040 Hb_000172_040 Hb_006111_050--Hb_000172_040 Hb_126871_010 Hb_126871_010 Hb_006111_050--Hb_126871_010 Hb_009615_140 Hb_009615_140 Hb_006111_050--Hb_009615_140 Hb_004881_090 Hb_004881_090 Hb_006111_050--Hb_004881_090 Hb_039046_010 Hb_039046_010 Hb_006111_050--Hb_039046_010 Hb_000834_120 Hb_000834_120 Hb_006111_050--Hb_000834_120 Hb_000172_040--Hb_126871_010 Hb_000172_040--Hb_009615_140 Hb_000172_040--Hb_039046_010 Hb_000172_040--Hb_004881_090 Hb_004324_180 Hb_004324_180 Hb_000172_040--Hb_004324_180 Hb_126871_010--Hb_009615_140 Hb_126871_010--Hb_039046_010 Hb_126871_010--Hb_004881_090 Hb_126871_010--Hb_004324_180 Hb_009615_140--Hb_039046_010 Hb_009615_140--Hb_004324_180 Hb_009615_140--Hb_004881_090 Hb_004881_090--Hb_000834_120 Hb_000373_090 Hb_000373_090 Hb_004881_090--Hb_000373_090 Hb_003486_040 Hb_003486_040 Hb_004881_090--Hb_003486_040 Hb_000049_320 Hb_000049_320 Hb_004881_090--Hb_000049_320 Hb_039046_010--Hb_004324_180 Hb_008895_010 Hb_008895_010 Hb_039046_010--Hb_008895_010 Hb_000834_120--Hb_000373_090 Hb_000834_120--Hb_003486_040 Hb_000834_120--Hb_000049_320 Hb_008686_050 Hb_008686_050 Hb_000834_120--Hb_008686_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.021192 0.0676811 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis