Hb_006117_060

Information

Type -
Description -
Location Contig6117: 47602-48495
Sequence    

Annotation

kegg
ID crb:CARUB_v10024452mg
description hypothetical protein
nr
ID XP_006295360.1
description hypothetical protein CARUB_v10024452mg [Capsella rubella]
swissprot
ID -
description -
trembl
ID R0HVX5
description Uncharacterized protein OS=Capsella rubella GN=CARUB_v10024452mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51003: 48048-48403 , PASA_asmbl_51004: 47599-48455
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006117_060 0.0 - - hypothetical protein CARUB_v10024452mg [Capsella rubella]
2 Hb_001396_110 0.1313999811 - - DNA primase large subunit, putative [Ricinus communis]
3 Hb_001911_040 0.1358488854 - - PREDICTED: uncharacterized protein LOC105628407 [Jatropha curcas]
4 Hb_003567_030 0.1392640041 - - PREDICTED: nifU-like protein 4, mitochondrial [Jatropha curcas]
5 Hb_006643_020 0.1398931104 - - PREDICTED: uncharacterized protein LOC105628407 [Jatropha curcas]
6 Hb_000045_300 0.1416074838 - - PREDICTED: peroxisomal nicotinamide adenine dinucleotide carrier isoform X1 [Jatropha curcas]
7 Hb_001189_040 0.1440584529 - - hypothetical protein POPTR_0014s10420g [Populus trichocarpa]
8 Hb_005074_030 0.1445787194 - - -
9 Hb_001051_040 0.1475865833 - - PREDICTED: uncharacterized protein LOC105628076 [Jatropha curcas]
10 Hb_000327_380 0.1502448424 - - hypothetical protein JCGZ_06621 [Jatropha curcas]
11 Hb_000849_130 0.1543065448 - - PREDICTED: adrenodoxin-like protein, mitochondrial [Nelumbo nucifera]
12 Hb_007926_050 0.1558696919 - - PREDICTED: probable CCR4-associated factor 1 homolog 11 [Jatropha curcas]
13 Hb_085972_010 0.1561098132 transcription factor TF Family: NAC NAC transcription factor 066 [Jatropha curcas]
14 Hb_001247_100 0.1573731586 - - PREDICTED: pyroglutamyl-peptidase 1-like protein [Jatropha curcas]
15 Hb_003389_040 0.1578160658 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]
16 Hb_000009_290 0.1582325381 - - PREDICTED: cold-regulated 413 plasma membrane protein 4-like [Jatropha curcas]
17 Hb_007943_050 0.1588729417 - - peroxiredoxin, putative [Ricinus communis]
18 Hb_130613_010 0.1591444781 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
19 Hb_000608_050 0.1598839484 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
20 Hb_000384_070 0.1620676965 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_006117_060 Hb_006117_060 Hb_001396_110 Hb_001396_110 Hb_006117_060--Hb_001396_110 Hb_001911_040 Hb_001911_040 Hb_006117_060--Hb_001911_040 Hb_003567_030 Hb_003567_030 Hb_006117_060--Hb_003567_030 Hb_006643_020 Hb_006643_020 Hb_006117_060--Hb_006643_020 Hb_000045_300 Hb_000045_300 Hb_006117_060--Hb_000045_300 Hb_001189_040 Hb_001189_040 Hb_006117_060--Hb_001189_040 Hb_001396_110--Hb_006643_020 Hb_187679_010 Hb_187679_010 Hb_001396_110--Hb_187679_010 Hb_004450_050 Hb_004450_050 Hb_001396_110--Hb_004450_050 Hb_008226_060 Hb_008226_060 Hb_001396_110--Hb_008226_060 Hb_000357_110 Hb_000357_110 Hb_001396_110--Hb_000357_110 Hb_085972_010 Hb_085972_010 Hb_001396_110--Hb_085972_010 Hb_011671_480 Hb_011671_480 Hb_001911_040--Hb_011671_480 Hb_009545_090 Hb_009545_090 Hb_001911_040--Hb_009545_090 Hb_000538_240 Hb_000538_240 Hb_001911_040--Hb_000538_240 Hb_000743_030 Hb_000743_030 Hb_001911_040--Hb_000743_030 Hb_001829_040 Hb_001829_040 Hb_001911_040--Hb_001829_040 Hb_001911_040--Hb_000357_110 Hb_002105_100 Hb_002105_100 Hb_003567_030--Hb_002105_100 Hb_171900_060 Hb_171900_060 Hb_003567_030--Hb_171900_060 Hb_002298_030 Hb_002298_030 Hb_003567_030--Hb_002298_030 Hb_000025_630 Hb_000025_630 Hb_003567_030--Hb_000025_630 Hb_000510_300 Hb_000510_300 Hb_003567_030--Hb_000510_300 Hb_012796_020 Hb_012796_020 Hb_003567_030--Hb_012796_020 Hb_006060_020 Hb_006060_020 Hb_006643_020--Hb_006060_020 Hb_000215_320 Hb_000215_320 Hb_006643_020--Hb_000215_320 Hb_006643_020--Hb_001911_040 Hb_006643_020--Hb_085972_010 Hb_011360_050 Hb_011360_050 Hb_006643_020--Hb_011360_050 Hb_007943_050 Hb_007943_050 Hb_000045_300--Hb_007943_050 Hb_000327_380 Hb_000327_380 Hb_000045_300--Hb_000327_380 Hb_000327_230 Hb_000327_230 Hb_000045_300--Hb_000327_230 Hb_000733_200 Hb_000733_200 Hb_000045_300--Hb_000733_200 Hb_003362_030 Hb_003362_030 Hb_000045_300--Hb_003362_030 Hb_012565_070 Hb_012565_070 Hb_000045_300--Hb_012565_070 Hb_007926_050 Hb_007926_050 Hb_001189_040--Hb_007926_050 Hb_002045_070 Hb_002045_070 Hb_001189_040--Hb_002045_070 Hb_038574_010 Hb_038574_010 Hb_001189_040--Hb_038574_010 Hb_000753_230 Hb_000753_230 Hb_001189_040--Hb_000753_230 Hb_000384_070 Hb_000384_070 Hb_001189_040--Hb_000384_070 Hb_033594_080 Hb_033594_080 Hb_001189_040--Hb_033594_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.6292 46.1206 30.2461 82.3098 8.00201 36.8757
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
50.7552 59.4097 36.0582 15.0919 10.4105

CAGE analysis