Hb_006120_020

Information

Type -
Description -
Location Contig6120: 6884-13361
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51027: 6903-7506
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006120_020 0.0 - - -
2 Hb_000149_120 0.088016651 - - PREDICTED: uncharacterized protein LOC105642119 isoform X2 [Jatropha curcas]
3 Hb_114025_010 0.1281962754 - - hypothetical protein POPTR_0008s13520g [Populus trichocarpa]
4 Hb_001675_230 0.1307299832 - - scab resistance family protein [Populus trichocarpa]
5 Hb_002928_220 0.1405466384 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
6 Hb_005618_110 0.1506808949 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
7 Hb_006970_100 0.1522446472 - - UDP-glucosyltransferase, putative [Ricinus communis]
8 Hb_040963_010 0.1536512913 - - PREDICTED: polyneuridine-aldehyde esterase-like [Populus euphratica]
9 Hb_008080_050 0.1573440525 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_006651_010 0.1576656743 - - PREDICTED: protein disulfide isomerase-like 1-4-like [Citrus sinensis]
11 Hb_007382_070 0.1676509272 - - PREDICTED: MAPK-interacting and spindle-stabilizing protein-like [Jatropha curcas]
12 Hb_000291_320 0.1703211036 - - Protein MLO, putative [Ricinus communis]
13 Hb_024570_020 0.1762313055 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2-like [Populus euphratica]
14 Hb_006569_110 0.1800136316 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000254_150 0.1876128301 - - PREDICTED: homeobox-leucine zipper protein GLABRA 2 [Jatropha curcas]
16 Hb_148121_030 0.189990166 - - PREDICTED: zinc-finger homeodomain protein 14 [Gossypium raimondii]
17 Hb_002542_090 0.1903432393 - - Potassium transporter, putative [Ricinus communis]
18 Hb_060822_010 0.1944153683 - - -
19 Hb_032299_070 0.1946363141 - - -
20 Hb_008489_010 0.1963364181 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]

Gene co-expression network

sample Hb_006120_020 Hb_006120_020 Hb_000149_120 Hb_000149_120 Hb_006120_020--Hb_000149_120 Hb_114025_010 Hb_114025_010 Hb_006120_020--Hb_114025_010 Hb_001675_230 Hb_001675_230 Hb_006120_020--Hb_001675_230 Hb_002928_220 Hb_002928_220 Hb_006120_020--Hb_002928_220 Hb_005618_110 Hb_005618_110 Hb_006120_020--Hb_005618_110 Hb_006970_100 Hb_006970_100 Hb_006120_020--Hb_006970_100 Hb_040963_010 Hb_040963_010 Hb_000149_120--Hb_040963_010 Hb_000149_120--Hb_002928_220 Hb_007382_070 Hb_007382_070 Hb_000149_120--Hb_007382_070 Hb_024570_020 Hb_024570_020 Hb_000149_120--Hb_024570_020 Hb_000149_120--Hb_006970_100 Hb_008080_050 Hb_008080_050 Hb_114025_010--Hb_008080_050 Hb_001856_060 Hb_001856_060 Hb_114025_010--Hb_001856_060 Hb_114025_010--Hb_001675_230 Hb_002435_080 Hb_002435_080 Hb_114025_010--Hb_002435_080 Hb_000291_320 Hb_000291_320 Hb_114025_010--Hb_000291_320 Hb_001675_230--Hb_008080_050 Hb_011282_070 Hb_011282_070 Hb_001675_230--Hb_011282_070 Hb_000422_020 Hb_000422_020 Hb_001675_230--Hb_000422_020 Hb_000575_110 Hb_000575_110 Hb_001675_230--Hb_000575_110 Hb_002928_220--Hb_006970_100 Hb_006569_110 Hb_006569_110 Hb_002928_220--Hb_006569_110 Hb_009486_100 Hb_009486_100 Hb_002928_220--Hb_009486_100 Hb_002542_090 Hb_002542_090 Hb_002928_220--Hb_002542_090 Hb_006938_010 Hb_006938_010 Hb_002928_220--Hb_006938_010 Hb_000254_150 Hb_000254_150 Hb_005618_110--Hb_000254_150 Hb_005618_110--Hb_040963_010 Hb_148121_030 Hb_148121_030 Hb_005618_110--Hb_148121_030 Hb_005618_110--Hb_000149_120 Hb_032299_070 Hb_032299_070 Hb_005618_110--Hb_032299_070 Hb_002740_170 Hb_002740_170 Hb_005618_110--Hb_002740_170 Hb_006651_010 Hb_006651_010 Hb_006970_100--Hb_006651_010 Hb_006970_100--Hb_007382_070 Hb_003060_080 Hb_003060_080 Hb_006970_100--Hb_003060_080 Hb_033622_020 Hb_033622_020 Hb_006970_100--Hb_033622_020 Hb_006970_100--Hb_006569_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.292552 0.11757 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.10886 0.422071

CAGE analysis