Hb_006120_030

Information

Type -
Description -
Location Contig6120: 12150-13435
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51028: 13341-13792 , PASA_asmbl_51029: 13825-14096
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006120_030 0.0 - - -
2 Hb_000917_120 0.0446948214 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002490_090 0.0733140152 - - PREDICTED: uncharacterized protein LOC105133003 [Populus euphratica]
4 Hb_054865_030 0.0992592727 - - -
5 Hb_000011_120 0.1005427472 - - PREDICTED: ATPase 10, plasma membrane-type-like [Populus euphratica]
6 Hb_009659_040 0.1061798889 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER [Populus euphratica]
7 Hb_172633_020 0.1088689761 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140 [Populus euphratica]
8 Hb_000597_080 0.1105742542 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]
9 Hb_029576_080 0.1197622433 - - Aspartic proteinase precursor, putative [Ricinus communis]
10 Hb_007123_020 0.1214367738 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HOX3 [Jatropha curcas]
11 Hb_138606_020 0.122211138 - - Nitrate transporter2.5 [Theobroma cacao]
12 Hb_132515_010 0.1233317278 - - phosphoprotein phosphatase, putative [Ricinus communis]
13 Hb_182021_010 0.1276984891 - - sucrose transporter 4 [Hevea brasiliensis]
14 Hb_175758_010 0.1352792685 - - PREDICTED: aspartic proteinase A1-like isoform X2 [Jatropha curcas]
15 Hb_001329_110 0.1356249376 - - PREDICTED: uncharacterized protein LOC105642675 [Jatropha curcas]
16 Hb_003767_010 0.1380727521 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Jatropha curcas]
17 Hb_009627_040 0.1412613752 - - Lipase class 3-related protein, putative [Theobroma cacao]
18 Hb_000844_100 0.1414197743 - - hypothetical protein JCGZ_04351 [Jatropha curcas]
19 Hb_029260_010 0.1422504672 - - nitrate transporter, putative [Ricinus communis]
20 Hb_001607_070 0.1432212238 - - hypothetical protein JCGZ_09913 [Jatropha curcas]

Gene co-expression network

sample Hb_006120_030 Hb_006120_030 Hb_000917_120 Hb_000917_120 Hb_006120_030--Hb_000917_120 Hb_002490_090 Hb_002490_090 Hb_006120_030--Hb_002490_090 Hb_054865_030 Hb_054865_030 Hb_006120_030--Hb_054865_030 Hb_000011_120 Hb_000011_120 Hb_006120_030--Hb_000011_120 Hb_009659_040 Hb_009659_040 Hb_006120_030--Hb_009659_040 Hb_172633_020 Hb_172633_020 Hb_006120_030--Hb_172633_020 Hb_000917_120--Hb_009659_040 Hb_029576_080 Hb_029576_080 Hb_000917_120--Hb_029576_080 Hb_000597_080 Hb_000597_080 Hb_000917_120--Hb_000597_080 Hb_000917_120--Hb_000011_120 Hb_001660_050 Hb_001660_050 Hb_000917_120--Hb_001660_050 Hb_002490_090--Hb_172633_020 Hb_184942_010 Hb_184942_010 Hb_002490_090--Hb_184942_010 Hb_002490_090--Hb_000917_120 Hb_007123_020 Hb_007123_020 Hb_002490_090--Hb_007123_020 Hb_150084_010 Hb_150084_010 Hb_002490_090--Hb_150084_010 Hb_132515_010 Hb_132515_010 Hb_054865_030--Hb_132515_010 Hb_054865_030--Hb_000917_120 Hb_000740_130 Hb_000740_130 Hb_054865_030--Hb_000740_130 Hb_003060_080 Hb_003060_080 Hb_054865_030--Hb_003060_080 Hb_064482_010 Hb_064482_010 Hb_054865_030--Hb_064482_010 Hb_001329_110 Hb_001329_110 Hb_000011_120--Hb_001329_110 Hb_009627_040 Hb_009627_040 Hb_000011_120--Hb_009627_040 Hb_175758_010 Hb_175758_010 Hb_000011_120--Hb_175758_010 Hb_005211_090 Hb_005211_090 Hb_000011_120--Hb_005211_090 Hb_010839_010 Hb_010839_010 Hb_000011_120--Hb_010839_010 Hb_001318_120 Hb_001318_120 Hb_000011_120--Hb_001318_120 Hb_009659_040--Hb_001660_050 Hb_138606_020 Hb_138606_020 Hb_009659_040--Hb_138606_020 Hb_170878_050 Hb_170878_050 Hb_009659_040--Hb_170878_050 Hb_000840_050 Hb_000840_050 Hb_009659_040--Hb_000840_050 Hb_029866_110 Hb_029866_110 Hb_009659_040--Hb_029866_110 Hb_172633_020--Hb_184942_010 Hb_002042_160 Hb_002042_160 Hb_172633_020--Hb_002042_160 Hb_172633_020--Hb_150084_010 Hb_000963_010 Hb_000963_010 Hb_172633_020--Hb_000963_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.487428 0.108895 0.333123 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.913434 0.400206

CAGE analysis