Hb_006120_040

Information

Type -
Description -
Location Contig6120: 21076-23327
Sequence    

Annotation

kegg
ID aly:ARALYDRAFT_473932
description hypothetical protein
nr
ID XP_012084118.1
description PREDICTED: prostatic spermine-binding protein [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JYS3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19033 PE=4 SV=1
Gene Ontology
ID GO:0005829
description prostatic spermine-binding protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51031: 21232-23316
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006120_040 0.0 - - PREDICTED: prostatic spermine-binding protein [Jatropha curcas]
2 Hb_000663_080 0.0731742953 transcription factor TF Family: HB Homeobox protein HAT3.1, putative [Ricinus communis]
3 Hb_000085_190 0.0775958823 - - FtsZ1 protein [Manihot esculenta]
4 Hb_000086_270 0.0798287597 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
5 Hb_003228_100 0.0846430481 - - PREDICTED: kinesin-related protein 4 [Jatropha curcas]
6 Hb_087313_010 0.0896727792 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000011_240 0.0907824799 - - PREDICTED: uncharacterized protein LOC105631316 [Jatropha curcas]
8 Hb_002870_020 0.093673056 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X1 [Jatropha curcas]
9 Hb_003506_030 0.0942557907 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X2 [Jatropha curcas]
10 Hb_012438_030 0.0944047401 - - PREDICTED: protein sym-1 [Jatropha curcas]
11 Hb_002218_020 0.0947571261 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
12 Hb_000012_270 0.0949415101 - - NADH-plastoquinone oxidoreductase, putative [Ricinus communis]
13 Hb_000975_210 0.0951402468 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
14 Hb_016448_010 0.0958677886 - - Protein MYG1, putative [Ricinus communis]
15 Hb_006846_170 0.099355773 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10L [Jatropha curcas]
16 Hb_002249_020 0.1004326093 - - PREDICTED: dual specificity protein phosphatase PHS1 [Jatropha curcas]
17 Hb_000207_200 0.1005215177 - - PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Jatropha curcas]
18 Hb_000327_330 0.1014231136 - - conserved hypothetical protein [Ricinus communis]
19 Hb_155025_010 0.1027164476 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
20 Hb_000878_160 0.1027212727 - - PREDICTED: D-lactate dehydrogenase [cytochrome], mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_006120_040 Hb_006120_040 Hb_000663_080 Hb_000663_080 Hb_006120_040--Hb_000663_080 Hb_000085_190 Hb_000085_190 Hb_006120_040--Hb_000085_190 Hb_000086_270 Hb_000086_270 Hb_006120_040--Hb_000086_270 Hb_003228_100 Hb_003228_100 Hb_006120_040--Hb_003228_100 Hb_087313_010 Hb_087313_010 Hb_006120_040--Hb_087313_010 Hb_000011_240 Hb_000011_240 Hb_006120_040--Hb_000011_240 Hb_000663_080--Hb_000011_240 Hb_000663_080--Hb_000086_270 Hb_000975_210 Hb_000975_210 Hb_000663_080--Hb_000975_210 Hb_006846_170 Hb_006846_170 Hb_000663_080--Hb_006846_170 Hb_000663_080--Hb_003228_100 Hb_000445_070 Hb_000445_070 Hb_000085_190--Hb_000445_070 Hb_005731_110 Hb_005731_110 Hb_000085_190--Hb_005731_110 Hb_000757_030 Hb_000757_030 Hb_000085_190--Hb_000757_030 Hb_005162_110 Hb_005162_110 Hb_000085_190--Hb_005162_110 Hb_000640_160 Hb_000640_160 Hb_000085_190--Hb_000640_160 Hb_000327_330 Hb_000327_330 Hb_000086_270--Hb_000327_330 Hb_002249_020 Hb_002249_020 Hb_000086_270--Hb_002249_020 Hb_006438_020 Hb_006438_020 Hb_000086_270--Hb_006438_020 Hb_016448_010 Hb_016448_010 Hb_000086_270--Hb_016448_010 Hb_000012_270 Hb_000012_270 Hb_003228_100--Hb_000012_270 Hb_002870_020 Hb_002870_020 Hb_003228_100--Hb_002870_020 Hb_004032_370 Hb_004032_370 Hb_003228_100--Hb_004032_370 Hb_003228_100--Hb_006846_170 Hb_002326_110 Hb_002326_110 Hb_003228_100--Hb_002326_110 Hb_003228_100--Hb_002249_020 Hb_012438_030 Hb_012438_030 Hb_087313_010--Hb_012438_030 Hb_002218_020 Hb_002218_020 Hb_087313_010--Hb_002218_020 Hb_001703_040 Hb_001703_040 Hb_087313_010--Hb_001703_040 Hb_000788_030 Hb_000788_030 Hb_087313_010--Hb_000788_030 Hb_102948_010 Hb_102948_010 Hb_087313_010--Hb_102948_010 Hb_004324_360 Hb_004324_360 Hb_087313_010--Hb_004324_360 Hb_001430_020 Hb_001430_020 Hb_000011_240--Hb_001430_020 Hb_000011_240--Hb_000085_190 Hb_000011_240--Hb_102948_010 Hb_000245_150 Hb_000245_150 Hb_000011_240--Hb_000245_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
79.4228 87.4794 203.77 70.2829 56.102 46.1275
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.3293 41.285 43.6222 57.3141 107.341

CAGE analysis