Hb_006120_050

Information

Type -
Description -
Location Contig6120: 24244-28736
Sequence    

Annotation

kegg
ID cit:102609701
description importin subunit alpha-1b-like
nr
ID XP_012084120.1
description PREDICTED: importin subunit alpha-4-like [Jatropha curcas]
swissprot
ID O80480
description Importin subunit alpha-4 OS=Arabidopsis thaliana GN=IMPA4 PE=1 SV=1
trembl
ID A0A067K804
description Importin subunit alpha OS=Jatropha curcas GN=JCGZ_19034 PE=3 SV=1
Gene Ontology
ID GO:0005634
description importin subunit alpha-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51033: 25463-28512
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006120_050 0.0 - - PREDICTED: importin subunit alpha-4-like [Jatropha curcas]
2 Hb_011310_110 0.0545142472 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g25400 isoform X1 [Jatropha curcas]
3 Hb_030982_010 0.0713388088 - - conserved hypothetical protein [Ricinus communis]
4 Hb_010672_020 0.0745467602 - - PREDICTED: ATP synthase gamma chain, chloroplastic-like [Jatropha curcas]
5 Hb_002272_240 0.0750308364 - - catalytic, putative [Ricinus communis]
6 Hb_002687_180 0.0753509915 - - PREDICTED: phytochrome-associated serine/threonine-protein phosphatase [Jatropha curcas]
7 Hb_121089_030 0.076818173 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
8 Hb_001246_130 0.0769377011 - - PREDICTED: NAD-dependent malic enzyme 62 kDa isoform, mitochondrial [Jatropha curcas]
9 Hb_000212_420 0.0792506098 - - PREDICTED: probable protein phosphatase 2C 33 [Jatropha curcas]
10 Hb_002552_040 0.0802742382 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
11 Hb_000503_020 0.0802977334 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
12 Hb_000703_190 0.0809463794 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X1 [Jatropha curcas]
13 Hb_001250_050 0.0819530989 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
14 Hb_007919_110 0.0821044071 - - PREDICTED: UDP-galactose transporter 2-like [Jatropha curcas]
15 Hb_000815_300 0.0823719113 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
16 Hb_007545_010 0.083777757 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
17 Hb_013726_050 0.0838735724 - - PREDICTED: probable methyltransferase PMT13 [Jatropha curcas]
18 Hb_021165_010 0.0848213415 - - PREDICTED: splicing factor U2af large subunit B-like isoform X1 [Jatropha curcas]
19 Hb_001257_030 0.0862492983 - - PREDICTED: serine/threonine-protein kinase Nek5 [Jatropha curcas]
20 Hb_001677_200 0.0872169102 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_006120_050 Hb_006120_050 Hb_011310_110 Hb_011310_110 Hb_006120_050--Hb_011310_110 Hb_030982_010 Hb_030982_010 Hb_006120_050--Hb_030982_010 Hb_010672_020 Hb_010672_020 Hb_006120_050--Hb_010672_020 Hb_002272_240 Hb_002272_240 Hb_006120_050--Hb_002272_240 Hb_002687_180 Hb_002687_180 Hb_006120_050--Hb_002687_180 Hb_121089_030 Hb_121089_030 Hb_006120_050--Hb_121089_030 Hb_011310_110--Hb_010672_020 Hb_007545_010 Hb_007545_010 Hb_011310_110--Hb_007545_010 Hb_000049_020 Hb_000049_020 Hb_011310_110--Hb_000049_020 Hb_000705_230 Hb_000705_230 Hb_011310_110--Hb_000705_230 Hb_000665_170 Hb_000665_170 Hb_011310_110--Hb_000665_170 Hb_030982_010--Hb_121089_030 Hb_001246_130 Hb_001246_130 Hb_030982_010--Hb_001246_130 Hb_000320_290 Hb_000320_290 Hb_030982_010--Hb_000320_290 Hb_000163_090 Hb_000163_090 Hb_030982_010--Hb_000163_090 Hb_021165_010 Hb_021165_010 Hb_030982_010--Hb_021165_010 Hb_010672_020--Hb_000705_230 Hb_010672_020--Hb_000665_170 Hb_000395_110 Hb_000395_110 Hb_010672_020--Hb_000395_110 Hb_010672_020--Hb_007545_010 Hb_013726_050 Hb_013726_050 Hb_002272_240--Hb_013726_050 Hb_001691_040 Hb_001691_040 Hb_002272_240--Hb_001691_040 Hb_007919_110 Hb_007919_110 Hb_002272_240--Hb_007919_110 Hb_002304_050 Hb_002304_050 Hb_002272_240--Hb_002304_050 Hb_001754_020 Hb_001754_020 Hb_002272_240--Hb_001754_020 Hb_001279_190 Hb_001279_190 Hb_002687_180--Hb_001279_190 Hb_004228_120 Hb_004228_120 Hb_002687_180--Hb_004228_120 Hb_001250_050 Hb_001250_050 Hb_002687_180--Hb_001250_050 Hb_002687_180--Hb_002304_050 Hb_002552_040 Hb_002552_040 Hb_002687_180--Hb_002552_040 Hb_005741_040 Hb_005741_040 Hb_002687_180--Hb_005741_040 Hb_000017_230 Hb_000017_230 Hb_121089_030--Hb_000017_230 Hb_121089_030--Hb_021165_010 Hb_121089_030--Hb_000320_290 Hb_001552_030 Hb_001552_030 Hb_121089_030--Hb_001552_030 Hb_010042_030 Hb_010042_030 Hb_121089_030--Hb_010042_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.89881 12.4493 19.8546 23.8896 8.59684 8.62815
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.78176 4.89698 9.21243 11.0083 14.2661

CAGE analysis