Hb_006120_080

Information

Type -
Description -
Location Contig6120: 42387-44625
Sequence    

Annotation

kegg
ID rcu:RCOM_1001660
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012084126.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g48810 [Jatropha curcas]
swissprot
ID Q9M302
description Pentatricopeptide repeat-containing protein At3g48810 OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1
trembl
ID A0A067JVP2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19037 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51043: 43276-43731 , PASA_asmbl_51044: 43768-43984
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006120_080 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g48810 [Jatropha curcas]
2 Hb_001366_130 0.1709334567 - - unnamed protein product [Coffea canephora]
3 Hb_004837_050 0.1782073851 - - -
4 Hb_002804_010 0.1818552733 - - PREDICTED: U-box domain-containing protein 33-like [Jatropha curcas]
5 Hb_178793_010 0.1873117713 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L3 [Nelumbo nucifera]
6 Hb_002073_020 0.1897188347 - - PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]
7 Hb_002874_170 0.1911542455 - - PREDICTED: L-arabinokinase-like isoform X3 [Jatropha curcas]
8 Hb_000649_300 0.1920925774 transcription factor TF Family: Tify JAZ9 [Hevea brasiliensis]
9 Hb_005568_130 0.1963304784 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
10 Hb_004712_160 0.19728232 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
11 Hb_001951_240 0.1979956223 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
12 Hb_002482_030 0.1987072169 transcription factor TF Family: PLATZ unknown [Medicago truncatula]
13 Hb_005496_160 0.2002080666 - - PREDICTED: calcium-transporting ATPase 1, chloroplastic [Jatropha curcas]
14 Hb_005288_050 0.2002873551 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR4 [Jatropha curcas]
15 Hb_000920_220 0.2008584745 - - PREDICTED: uncharacterized protein LOC105631216 [Jatropha curcas]
16 Hb_172421_010 0.2026685781 - - cysteine protease [Hevea brasiliensis]
17 Hb_000853_220 0.2033165453 - - PREDICTED: cytidine deaminase 1 [Jatropha curcas]
18 Hb_001247_210 0.2038484874 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000200_170 0.2047949774 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Populus euphratica]
20 Hb_007416_260 0.2047959604 - - PREDICTED: E3 ubiquitin-protein ligase RNF12-A-like [Jatropha curcas]

Gene co-expression network

sample Hb_006120_080 Hb_006120_080 Hb_001366_130 Hb_001366_130 Hb_006120_080--Hb_001366_130 Hb_004837_050 Hb_004837_050 Hb_006120_080--Hb_004837_050 Hb_002804_010 Hb_002804_010 Hb_006120_080--Hb_002804_010 Hb_178793_010 Hb_178793_010 Hb_006120_080--Hb_178793_010 Hb_002073_020 Hb_002073_020 Hb_006120_080--Hb_002073_020 Hb_002874_170 Hb_002874_170 Hb_006120_080--Hb_002874_170 Hb_000920_220 Hb_000920_220 Hb_001366_130--Hb_000920_220 Hb_008667_060 Hb_008667_060 Hb_001366_130--Hb_008667_060 Hb_001366_130--Hb_178793_010 Hb_001366_130--Hb_002874_170 Hb_000038_040 Hb_000038_040 Hb_001366_130--Hb_000038_040 Hb_002740_040 Hb_002740_040 Hb_004837_050--Hb_002740_040 Hb_000470_110 Hb_000470_110 Hb_004837_050--Hb_000470_110 Hb_000242_030 Hb_000242_030 Hb_004837_050--Hb_000242_030 Hb_001878_060 Hb_001878_060 Hb_004837_050--Hb_001878_060 Hb_002250_050 Hb_002250_050 Hb_004837_050--Hb_002250_050 Hb_087587_010 Hb_087587_010 Hb_004837_050--Hb_087587_010 Hb_005288_050 Hb_005288_050 Hb_002804_010--Hb_005288_050 Hb_002387_040 Hb_002387_040 Hb_002804_010--Hb_002387_040 Hb_000418_050 Hb_000418_050 Hb_002804_010--Hb_000418_050 Hb_024714_070 Hb_024714_070 Hb_002804_010--Hb_024714_070 Hb_000753_140 Hb_000753_140 Hb_002804_010--Hb_000753_140 Hb_001951_240 Hb_001951_240 Hb_002804_010--Hb_001951_240 Hb_018691_020 Hb_018691_020 Hb_178793_010--Hb_018691_020 Hb_028487_130 Hb_028487_130 Hb_178793_010--Hb_028487_130 Hb_002849_070 Hb_002849_070 Hb_178793_010--Hb_002849_070 Hb_000200_170 Hb_000200_170 Hb_178793_010--Hb_000200_170 Hb_005000_050 Hb_005000_050 Hb_178793_010--Hb_005000_050 Hb_178793_010--Hb_000920_220 Hb_005539_100 Hb_005539_100 Hb_002073_020--Hb_005539_100 Hb_172676_010 Hb_172676_010 Hb_002073_020--Hb_172676_010 Hb_002073_020--Hb_001951_240 Hb_000649_300 Hb_000649_300 Hb_002073_020--Hb_000649_300 Hb_001053_200 Hb_001053_200 Hb_002073_020--Hb_001053_200 Hb_005496_160 Hb_005496_160 Hb_002073_020--Hb_005496_160 Hb_002874_170--Hb_000649_300 Hb_002874_170--Hb_172676_010 Hb_002874_170--Hb_001951_240 Hb_002874_170--Hb_002073_020 Hb_019863_060 Hb_019863_060 Hb_002874_170--Hb_019863_060 Hb_002874_170--Hb_005496_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0462086 0.428573 0.224967 0.202773 0.0183297 0.157544
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0222475 0.0700203 0 0.0835613 0.148034

CAGE analysis