Hb_006120_090

Information

Type -
Description -
Location Contig6120: 45273-46419
Sequence    

Annotation

kegg
ID pop:POPTR_0008s10160g
description POPTRDRAFT_874532; hypothetical protein
nr
ID XP_012084125.1
description PREDICTED: desiccation-related protein PCC13-62-like [Jatropha curcas]
swissprot
ID P22242
description Desiccation-related protein PCC13-62 OS=Craterostigma plantagineum PE=2 SV=1
trembl
ID B9HIK8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s10160g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006120_090 0.0 - - PREDICTED: desiccation-related protein PCC13-62-like [Jatropha curcas]
2 Hb_001979_030 0.1342395369 - - hypothetical protein POPTR_0016s06130g [Populus trichocarpa]
3 Hb_044555_010 0.2514204907 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
4 Hb_003502_100 0.265627542 - - -
5 Hb_001288_030 0.2740388498 - - -
6 Hb_000174_010 0.2780172274 - - PREDICTED: uncharacterized protein LOC103444904 [Malus domestica]
7 Hb_004128_040 0.2944834419 - - -
8 Hb_000005_400 0.2982726075 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 23 isoform X2 [Jatropha curcas]
9 Hb_000205_200 0.2986371999 - - -
10 Hb_026740_010 0.3037716573 - - PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]
11 Hb_124996_010 0.3060946267 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
12 Hb_000890_090 0.3097138799 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF086 [Jatropha curcas]
13 Hb_007553_010 0.3123746165 - - -
14 Hb_006816_270 0.312989699 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001922_180 0.3183313394 - - hevamine-A precursor, putative [Ricinus communis]
16 Hb_001017_080 0.3205590946 - - hypothetical protein POPTR_0010s06020g [Populus trichocarpa]
17 Hb_005245_070 0.3252342556 - - PREDICTED: uncharacterized protein LOC105643658 [Jatropha curcas]
18 Hb_002081_170 0.3263802227 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
19 Hb_000042_360 0.3293281263 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004097_040 0.3309040247 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_006120_090 Hb_006120_090 Hb_001979_030 Hb_001979_030 Hb_006120_090--Hb_001979_030 Hb_044555_010 Hb_044555_010 Hb_006120_090--Hb_044555_010 Hb_003502_100 Hb_003502_100 Hb_006120_090--Hb_003502_100 Hb_001288_030 Hb_001288_030 Hb_006120_090--Hb_001288_030 Hb_000174_010 Hb_000174_010 Hb_006120_090--Hb_000174_010 Hb_004128_040 Hb_004128_040 Hb_006120_090--Hb_004128_040 Hb_000205_200 Hb_000205_200 Hb_001979_030--Hb_000205_200 Hb_001979_030--Hb_044555_010 Hb_003996_030 Hb_003996_030 Hb_001979_030--Hb_003996_030 Hb_000329_260 Hb_000329_260 Hb_001979_030--Hb_000329_260 Hb_001864_090 Hb_001864_090 Hb_001979_030--Hb_001864_090 Hb_004097_040 Hb_004097_040 Hb_044555_010--Hb_004097_040 Hb_004200_030 Hb_004200_030 Hb_044555_010--Hb_004200_030 Hb_002081_170 Hb_002081_170 Hb_044555_010--Hb_002081_170 Hb_007386_010 Hb_007386_010 Hb_044555_010--Hb_007386_010 Hb_000136_160 Hb_000136_160 Hb_044555_010--Hb_000136_160 Hb_005245_070 Hb_005245_070 Hb_003502_100--Hb_005245_070 Hb_003502_100--Hb_004128_040 Hb_000975_180 Hb_000975_180 Hb_003502_100--Hb_000975_180 Hb_001842_050 Hb_001842_050 Hb_003502_100--Hb_001842_050 Hb_000367_030 Hb_000367_030 Hb_003502_100--Hb_000367_030 Hb_009778_040 Hb_009778_040 Hb_003502_100--Hb_009778_040 Hb_002226_040 Hb_002226_040 Hb_001288_030--Hb_002226_040 Hb_003106_220 Hb_003106_220 Hb_001288_030--Hb_003106_220 Hb_000923_090 Hb_000923_090 Hb_001288_030--Hb_000923_090 Hb_000030_200 Hb_000030_200 Hb_001288_030--Hb_000030_200 Hb_006816_270 Hb_006816_270 Hb_001288_030--Hb_006816_270 Hb_124996_010 Hb_124996_010 Hb_001288_030--Hb_124996_010 Hb_000174_010--Hb_001979_030 Hb_078804_010 Hb_078804_010 Hb_000174_010--Hb_078804_010 Hb_000174_010--Hb_001864_090 Hb_056559_010 Hb_056559_010 Hb_000174_010--Hb_056559_010 Hb_000445_170 Hb_000445_170 Hb_000174_010--Hb_000445_170 Hb_004128_040--Hb_005245_070 Hb_004429_110 Hb_004429_110 Hb_004128_040--Hb_004429_110 Hb_021056_010 Hb_021056_010 Hb_004128_040--Hb_021056_010 Hb_021924_010 Hb_021924_010 Hb_004128_040--Hb_021924_010 Hb_002232_470 Hb_002232_470 Hb_004128_040--Hb_002232_470
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.022827 0 0.0171049 0.148414 0.0213975 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.156914 0.123409 0 0.0662129 0

CAGE analysis