Hb_006120_150

Information

Type -
Description -
Location Contig6120: 84392-88463
Sequence    

Annotation

kegg
ID rcu:RCOM_1002060
description beta-fructofuranosidase, putative
nr
ID AHF27220.1
description invertase [Hevea brasiliensis]
swissprot
ID B9DFA8
description Alkaline/neutral invertase C, mitochondrial OS=Arabidopsis thaliana GN=INVC PE=1 SV=1
trembl
ID W0FQR0
description Invertase OS=Hevea brasiliensis GN=IN2 PE=2 SV=1
Gene Ontology
ID GO:0005739
description alkaline neutral invertase cinv2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51050: 84354-88010 , PASA_asmbl_51051: 85896-86293
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006120_150 0.0 - - invertase [Hevea brasiliensis]
2 Hb_012545_030 0.1221477463 - - Polyadenylate-binding protein RBP47C [Glycine soja]
3 Hb_000123_240 0.1305873323 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
4 Hb_010891_020 0.1444441908 - - Cucumisin precursor, putative [Ricinus communis]
5 Hb_005701_110 0.146947646 - - PREDICTED: probable 1-acylglycerol-3-phosphate O-acyltransferase [Jatropha curcas]
6 Hb_002042_170 0.1502471577 - - RING/U-box superfamily protein [Theobroma cacao]
7 Hb_004208_140 0.1534063336 - - PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]
8 Hb_018790_050 0.1567128078 - - hypothetical protein CICLE_v10017858mg [Citrus clementina]
9 Hb_000123_220 0.1571309168 transcription factor TF Family: C2H2 hypothetical protein JCGZ_18434 [Jatropha curcas]
10 Hb_002897_100 0.1571758165 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
11 Hb_001898_130 0.1586413398 - - ATP binding protein, putative [Ricinus communis]
12 Hb_004117_170 0.1634010586 - - PREDICTED: probable receptor-like protein kinase At3g55450 [Jatropha curcas]
13 Hb_061256_010 0.1635238574 - - PREDICTED: uncharacterized protein LOC105635220 isoform X2 [Jatropha curcas]
14 Hb_000193_260 0.1650604753 - - PREDICTED: protein NEN1 [Jatropha curcas]
15 Hb_002686_150 0.1653449448 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
16 Hb_001729_020 0.1655731954 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
17 Hb_001247_020 0.1661309719 - - galactinol synthase family protein [Populus trichocarpa]
18 Hb_000156_090 0.1672223623 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3 isoform X1 [Jatropha curcas]
19 Hb_000272_110 0.1674962601 - - PREDICTED: uncharacterized protein LOC105633479 isoform X1 [Jatropha curcas]
20 Hb_004193_010 0.1680504756 - - PREDICTED: uncharacterized protein LOC105650669 [Jatropha curcas]

Gene co-expression network

sample Hb_006120_150 Hb_006120_150 Hb_012545_030 Hb_012545_030 Hb_006120_150--Hb_012545_030 Hb_000123_240 Hb_000123_240 Hb_006120_150--Hb_000123_240 Hb_010891_020 Hb_010891_020 Hb_006120_150--Hb_010891_020 Hb_005701_110 Hb_005701_110 Hb_006120_150--Hb_005701_110 Hb_002042_170 Hb_002042_170 Hb_006120_150--Hb_002042_170 Hb_004208_140 Hb_004208_140 Hb_006120_150--Hb_004208_140 Hb_000421_230 Hb_000421_230 Hb_012545_030--Hb_000421_230 Hb_012545_030--Hb_005701_110 Hb_001511_030 Hb_001511_030 Hb_012545_030--Hb_001511_030 Hb_001318_150 Hb_001318_150 Hb_012545_030--Hb_001318_150 Hb_003147_070 Hb_003147_070 Hb_012545_030--Hb_003147_070 Hb_001247_020 Hb_001247_020 Hb_000123_240--Hb_001247_020 Hb_025708_010 Hb_025708_010 Hb_000123_240--Hb_025708_010 Hb_025708_020 Hb_025708_020 Hb_000123_240--Hb_025708_020 Hb_002343_010 Hb_002343_010 Hb_000123_240--Hb_002343_010 Hb_002766_050 Hb_002766_050 Hb_000123_240--Hb_002766_050 Hb_027654_080 Hb_027654_080 Hb_010891_020--Hb_027654_080 Hb_010891_020--Hb_002766_050 Hb_012340_060 Hb_012340_060 Hb_010891_020--Hb_012340_060 Hb_025787_010 Hb_025787_010 Hb_010891_020--Hb_025787_010 Hb_010891_020--Hb_004208_140 Hb_001155_050 Hb_001155_050 Hb_005701_110--Hb_001155_050 Hb_000984_260 Hb_000984_260 Hb_005701_110--Hb_000984_260 Hb_015778_040 Hb_015778_040 Hb_005701_110--Hb_015778_040 Hb_008768_020 Hb_008768_020 Hb_005701_110--Hb_008768_020 Hb_004774_020 Hb_004774_020 Hb_002042_170--Hb_004774_020 Hb_000156_090 Hb_000156_090 Hb_002042_170--Hb_000156_090 Hb_003925_040 Hb_003925_040 Hb_002042_170--Hb_003925_040 Hb_010872_070 Hb_010872_070 Hb_002042_170--Hb_010872_070 Hb_000656_390 Hb_000656_390 Hb_002042_170--Hb_000656_390 Hb_171900_020 Hb_171900_020 Hb_002042_170--Hb_171900_020 Hb_002900_120 Hb_002900_120 Hb_004208_140--Hb_002900_120 Hb_004208_140--Hb_004774_020 Hb_002387_040 Hb_002387_040 Hb_004208_140--Hb_002387_040 Hb_004208_140--Hb_002042_170 Hb_004208_140--Hb_000156_090 Hb_004208_140--Hb_002766_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.88974 19.8471 25.5948 10.7576 1.18323 1.37474
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.1051 5.75773 11.9361 8.99369 6.06543

CAGE analysis