Hb_006120_160

Information

Type -
Description -
Location Contig6120: 91478-92325
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006120_160 0.0 - - -
2 Hb_101034_010 0.007064016 - - -
3 Hb_005432_020 0.0130911176 - - -
4 Hb_181013_010 0.0194884666 - - PREDICTED: uncharacterized protein LOC105629028 [Jatropha curcas]
5 Hb_000142_090 0.0246510601 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]
6 Hb_159124_010 0.0301244382 - - PREDICTED: uncharacterized protein LOC103332224 [Prunus mume]
7 Hb_134377_070 0.0336451063 - - -
8 Hb_056506_080 0.0453782508 - - PREDICTED: uncharacterized protein LOC104888944 [Beta vulgaris subsp. vulgaris]
9 Hb_179183_010 0.060795796 - - RALF-LIKE 32 family protein [Populus trichocarpa]
10 Hb_008755_020 0.0798703508 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_000975_060 0.0850138309 - - -
12 Hb_047923_030 0.0915681541 - - hypothetical protein JCGZ_09181 [Jatropha curcas]
13 Hb_002576_010 0.0952773513 - - -
14 Hb_000248_020 0.0991393202 - - PREDICTED: uncharacterized protein LOC104243878 [Nicotiana sylvestris]
15 Hb_094694_010 0.1004025682 - - -
16 Hb_099878_040 0.1026048507 - - PREDICTED: uncharacterized protein LOC102703670 [Oryza brachyantha]
17 Hb_039547_010 0.1061506219 - - PREDICTED: equilibrative nucleotide transporter 3-like [Jatropha curcas]
18 Hb_000916_010 0.1065986718 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
19 Hb_114121_010 0.1250905739 - - -
20 Hb_001174_050 0.1285982525 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_006120_160 Hb_006120_160 Hb_101034_010 Hb_101034_010 Hb_006120_160--Hb_101034_010 Hb_005432_020 Hb_005432_020 Hb_006120_160--Hb_005432_020 Hb_181013_010 Hb_181013_010 Hb_006120_160--Hb_181013_010 Hb_000142_090 Hb_000142_090 Hb_006120_160--Hb_000142_090 Hb_159124_010 Hb_159124_010 Hb_006120_160--Hb_159124_010 Hb_134377_070 Hb_134377_070 Hb_006120_160--Hb_134377_070 Hb_101034_010--Hb_005432_020 Hb_101034_010--Hb_181013_010 Hb_101034_010--Hb_000142_090 Hb_101034_010--Hb_159124_010 Hb_101034_010--Hb_134377_070 Hb_005432_020--Hb_181013_010 Hb_005432_020--Hb_000142_090 Hb_005432_020--Hb_134377_070 Hb_005432_020--Hb_159124_010 Hb_181013_010--Hb_000142_090 Hb_181013_010--Hb_134377_070 Hb_181013_010--Hb_159124_010 Hb_000142_090--Hb_134377_070 Hb_000142_090--Hb_159124_010 Hb_159124_010--Hb_134377_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0567413 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0508902 0.222327

CAGE analysis