Hb_006120_200

Information

Type -
Description -
Location Contig6120: 125941-129808
Sequence    

Annotation

kegg
ID pmum:103333282
description uncharacterized LOC103333282
nr
ID XP_008234322.1
description PREDICTED: uncharacterized protein LOC103333282 [Prunus mume]
swissprot
ID Q0ZPV7
description Carboxylesterase 1 OS=Actinidia eriantha GN=CXE1 PE=1 SV=1
trembl
ID A0A061G0D6
description Carboxyesterase 20, putative OS=Theobroma cacao GN=TCM_015038 PE=4 SV=1
Gene Ontology
ID GO:0016787
description carboxylesterase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51055: 128759-129859
cDNA
(Sanger)
(ID:Location)		 009_D07.ab1: 129010-129700

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006120_200 0.0 - - PREDICTED: uncharacterized protein LOC103333282 [Prunus mume]
2 Hb_000762_020 0.1041049826 - - PREDICTED: uncharacterized protein LOC105641515 [Jatropha curcas]
3 Hb_000481_020 0.1079742571 - - PREDICTED: shikimate kinase 1, chloroplastic [Jatropha curcas]
4 Hb_001315_020 0.1104502309 - - ring finger protein, putative [Ricinus communis]
5 Hb_006070_010 0.1138925216 rubber biosynthesis Gene Name: CPT2 cis-prenyltransferase 3 [Hevea brasiliensis]
6 Hb_002027_300 0.1178911668 - - PREDICTED: rho GTPase-activating protein 2 [Jatropha curcas]
7 Hb_000957_040 0.1207476137 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
8 Hb_012347_010 0.1220278914 transcription factor TF Family: AP2 hypothetical protein JCGZ_03155 [Jatropha curcas]
9 Hb_004286_040 0.1222999743 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH74 isoform X1 [Jatropha curcas]
10 Hb_003777_180 0.1247019445 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 isoform X1 [Jatropha curcas]
11 Hb_001140_160 0.1262834445 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
12 Hb_000184_040 0.1315880216 rubber biosynthesis Gene Name: Acetyl-CoA acetyltransferase PREDICTED: acetyl-CoA acetyltransferase, cytosolic 1-like isoform X2 [Nelumbo nucifera]
13 Hb_055335_010 0.1319922371 - - PREDICTED: tetraspanin-2 [Jatropha curcas]
14 Hb_027380_040 0.1348896006 - - hypothetical protein B456_011G046500, partial [Gossypium raimondii]
15 Hb_178968_150 0.1349511407 - - zinc finger protein, putative [Ricinus communis]
16 Hb_003018_140 0.1388188111 - - PREDICTED: endoglucanase 24-like [Jatropha curcas]
17 Hb_000676_220 0.1400112523 - - ADP-ribosylation factor, putative [Ricinus communis]
18 Hb_007766_010 0.1422656929 - - hypothetical protein JCGZ_06718 [Jatropha curcas]
19 Hb_100414_010 0.1426915311 rubber biosynthesis Gene Name: Farnesyl diphosphate synthase farnesyl pyrophosphate synthase [Hevea brasiliensis]
20 Hb_001357_140 0.1438065433 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_006120_200 Hb_006120_200 Hb_000762_020 Hb_000762_020 Hb_006120_200--Hb_000762_020 Hb_000481_020 Hb_000481_020 Hb_006120_200--Hb_000481_020 Hb_001315_020 Hb_001315_020 Hb_006120_200--Hb_001315_020 Hb_006070_010 Hb_006070_010 Hb_006120_200--Hb_006070_010 Hb_002027_300 Hb_002027_300 Hb_006120_200--Hb_002027_300 Hb_000957_040 Hb_000957_040 Hb_006120_200--Hb_000957_040 Hb_000762_020--Hb_000957_040 Hb_001140_160 Hb_001140_160 Hb_000762_020--Hb_001140_160 Hb_000184_040 Hb_000184_040 Hb_000762_020--Hb_000184_040 Hb_012347_010 Hb_012347_010 Hb_000762_020--Hb_012347_010 Hb_001017_090 Hb_001017_090 Hb_000762_020--Hb_001017_090 Hb_003777_180 Hb_003777_180 Hb_000481_020--Hb_003777_180 Hb_007766_010 Hb_007766_010 Hb_000481_020--Hb_007766_010 Hb_000481_020--Hb_000184_040 Hb_002681_020 Hb_002681_020 Hb_000481_020--Hb_002681_020 Hb_007919_050 Hb_007919_050 Hb_000481_020--Hb_007919_050 Hb_055335_010 Hb_055335_010 Hb_001315_020--Hb_055335_010 Hb_001315_020--Hb_002027_300 Hb_001315_020--Hb_006070_010 Hb_001141_470 Hb_001141_470 Hb_001315_020--Hb_001141_470 Hb_001315_020--Hb_001140_160 Hb_006070_010--Hb_007766_010 Hb_006070_010--Hb_055335_010 Hb_006070_010--Hb_000481_020 Hb_006070_010--Hb_000762_020 Hb_002027_300--Hb_012347_010 Hb_002027_300--Hb_000957_040 Hb_002027_300--Hb_001140_160 Hb_010872_060 Hb_010872_060 Hb_002027_300--Hb_010872_060 Hb_000957_040--Hb_001140_160 Hb_000957_040--Hb_012347_010 Hb_000130_390 Hb_000130_390 Hb_000957_040--Hb_000130_390 Hb_000957_040--Hb_010872_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
353.79 23.1756 28.8243 55.4642 83.657 151.112
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
269.221 123.73 170.663 20.3951 22.7823

CAGE analysis