Hb_006120_210

Information

Type -
Description -
Location Contig6120: 140042-141954
Sequence    

Annotation

kegg
ID rcu:RCOM_1498120
description gibberellin 20-oxidase, putative (EC:1.14.11.15)
nr
ID XP_002510873.1
description gibberellin 20-oxidase, putative [Ricinus communis]
swissprot
ID Q39110
description Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana GN=GA20OX1 PE=2 SV=2
trembl
ID B9R9J8
description Gibberellin 20-oxidase, putative OS=Ricinus communis GN=RCOM_1498120 PE=3 SV=1
Gene Ontology
ID GO:0005506
description gibberellin 20-oxidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51057: 139995-141455
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006120_210 0.0 - - gibberellin 20-oxidase, putative [Ricinus communis]
2 Hb_003747_250 0.0814445944 - - PREDICTED: potassium transporter 7 isoform X2 [Elaeis guineensis]
3 Hb_000742_130 0.0913147415 - - PREDICTED: probable receptor-like protein kinase At1g30570 [Jatropha curcas]
4 Hb_000563_630 0.1096718491 - - PREDICTED: uncharacterized protein LOC105643442 [Jatropha curcas]
5 Hb_002518_220 0.1110913499 - - PREDICTED: uncharacterized protein LOC105631001 isoform X2 [Jatropha curcas]
6 Hb_002639_050 0.1169678054 - - multicopper oxidase, putative [Ricinus communis]
7 Hb_001054_040 0.1176361602 - - hypothetical protein JCGZ_25310 [Jatropha curcas]
8 Hb_000098_260 0.1197127111 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
9 Hb_000329_720 0.1216375707 transcription factor TF Family: ERF hypothetical protein POPTR_0014s05500g [Populus trichocarpa]
10 Hb_003055_080 0.1266670528 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3 isoform X1 [Jatropha curcas]
11 Hb_008749_010 0.1275020154 - - PREDICTED: auxin efflux carrier component 3-like [Jatropha curcas]
12 Hb_012539_100 0.128399404 - - PREDICTED: putative proline-rich receptor-like protein kinase PERK11 [Jatropha curcas]
13 Hb_000365_430 0.1286676019 - - PREDICTED: BTB/POZ domain-containing protein At3g08570-like [Jatropha curcas]
14 Hb_001562_030 0.1287688633 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH35 isoform X1 [Jatropha curcas]
15 Hb_004634_030 0.1295446034 - - conserved hypothetical protein [Ricinus communis]
16 Hb_092975_010 0.1318236258 - - hypothetical protein JCGZ_04359 [Jatropha curcas]
17 Hb_001828_110 0.1318836945 - - PREDICTED: lysine histidine transporter 1-like [Tarenaya hassleriana]
18 Hb_008806_040 0.1325784549 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
19 Hb_002888_100 0.1330005217 - - PREDICTED: uncharacterized protein LOC103699074, partial [Phoenix dactylifera]
20 Hb_000163_180 0.1333688467 - - PREDICTED: UDP-glucuronic acid decarboxylase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_006120_210 Hb_006120_210 Hb_003747_250 Hb_003747_250 Hb_006120_210--Hb_003747_250 Hb_000742_130 Hb_000742_130 Hb_006120_210--Hb_000742_130 Hb_000563_630 Hb_000563_630 Hb_006120_210--Hb_000563_630 Hb_002518_220 Hb_002518_220 Hb_006120_210--Hb_002518_220 Hb_002639_050 Hb_002639_050 Hb_006120_210--Hb_002639_050 Hb_001054_040 Hb_001054_040 Hb_006120_210--Hb_001054_040 Hb_008749_010 Hb_008749_010 Hb_003747_250--Hb_008749_010 Hb_003747_250--Hb_000742_130 Hb_008806_040 Hb_008806_040 Hb_003747_250--Hb_008806_040 Hb_004228_070 Hb_004228_070 Hb_003747_250--Hb_004228_070 Hb_000365_430 Hb_000365_430 Hb_003747_250--Hb_000365_430 Hb_000645_160 Hb_000645_160 Hb_000742_130--Hb_000645_160 Hb_000742_130--Hb_002518_220 Hb_000098_260 Hb_000098_260 Hb_000742_130--Hb_000098_260 Hb_092975_010 Hb_092975_010 Hb_000742_130--Hb_092975_010 Hb_000329_720 Hb_000329_720 Hb_000742_130--Hb_000329_720 Hb_034507_090 Hb_034507_090 Hb_000563_630--Hb_034507_090 Hb_000210_160 Hb_000210_160 Hb_000563_630--Hb_000210_160 Hb_000563_630--Hb_000742_130 Hb_002888_100 Hb_002888_100 Hb_000563_630--Hb_002888_100 Hb_003849_200 Hb_003849_200 Hb_000563_630--Hb_003849_200 Hb_003266_090 Hb_003266_090 Hb_002518_220--Hb_003266_090 Hb_003581_050 Hb_003581_050 Hb_002518_220--Hb_003581_050 Hb_043630_030 Hb_043630_030 Hb_002518_220--Hb_043630_030 Hb_012539_100 Hb_012539_100 Hb_002518_220--Hb_012539_100 Hb_001195_550 Hb_001195_550 Hb_002639_050--Hb_001195_550 Hb_002639_050--Hb_001054_040 Hb_002301_400 Hb_002301_400 Hb_002639_050--Hb_002301_400 Hb_001159_090 Hb_001159_090 Hb_002639_050--Hb_001159_090 Hb_006196_030 Hb_006196_030 Hb_002639_050--Hb_006196_030 Hb_000300_190 Hb_000300_190 Hb_002639_050--Hb_000300_190 Hb_022092_110 Hb_022092_110 Hb_001054_040--Hb_022092_110 Hb_002311_280 Hb_002311_280 Hb_001054_040--Hb_002311_280 Hb_001054_040--Hb_003266_090 Hb_012404_020 Hb_012404_020 Hb_001054_040--Hb_012404_020 Hb_001054_040--Hb_002518_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.107328 4.92631 8.18529 10.481 0.274094 0.0472275
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0453136 0.0853564 2.1504 2.61436

CAGE analysis