Hb_006130_010

Information

Type -
Description -
Location Contig6130: 42195-48988
Sequence    

Annotation

kegg
ID pop:POPTR_0003s15650g
description POPTRDRAFT_711917; CTP synthase family protein
nr
ID XP_012075581.1
description PREDICTED: CTP synthase [Jatropha curcas]
swissprot
ID Q54V77
description CTP synthase OS=Dictyostelium discoideum GN=ctps PE=3 SV=1
trembl
ID A0A067KRJ1
description CTP synthase OS=Jatropha curcas GN=JCGZ_09198 PE=3 SV=1
Gene Ontology
ID GO:0003883
description ctp synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51097: 44182-48976 , PASA_asmbl_51098: 44730-45399
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006130_010 0.0 - - PREDICTED: CTP synthase [Jatropha curcas]
2 Hb_001832_190 0.082406264 - - conserved hypothetical protein [Ricinus communis]
3 Hb_014720_160 0.1068062195 - - PREDICTED: anthranilate phosphoribosyltransferase, chloroplastic [Jatropha curcas]
4 Hb_000922_330 0.109894024 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
5 Hb_001855_010 0.114892605 - - PREDICTED: uncharacterized protein KIAA0930 homolog isoform X2 [Jatropha curcas]
6 Hb_005754_060 0.1196347782 - - conserved hypothetical protein [Ricinus communis]
7 Hb_073171_110 0.119704368 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
8 Hb_000567_360 0.1211098879 - - hypothetical protein CISIN_1g004656mg [Citrus sinensis]
9 Hb_001135_160 0.1231897549 - - PREDICTED: elongator complex protein 6 [Jatropha curcas]
10 Hb_009048_040 0.1245400195 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
11 Hb_000010_090 0.1252391593 - - PREDICTED: afadin- and alpha-actinin-binding protein isoform X1 [Jatropha curcas]
12 Hb_007447_010 0.1253104921 - - PREDICTED: CBS domain-containing protein CBSCBSPB3 isoform X3 [Jatropha curcas]
13 Hb_033594_130 0.1253144592 - - PREDICTED: 50S ribosomal protein L12, cyanelle-like [Jatropha curcas]
14 Hb_004182_040 0.1258270071 - - PREDICTED: J domain-containing protein spf31 [Jatropha curcas]
15 Hb_000997_020 0.1270974302 - - PREDICTED: uncharacterized protein LOC105629694 [Jatropha curcas]
16 Hb_000836_630 0.12789177 - - PREDICTED: WD repeat-containing protein 44 [Jatropha curcas]
17 Hb_000172_370 0.1283055176 - - -
18 Hb_000883_130 0.1284373731 - - PREDICTED: novel plant SNARE 11 [Jatropha curcas]
19 Hb_000352_110 0.1284771879 - - DNA topoisomerase II, putative [Ricinus communis]
20 Hb_000179_020 0.1285251574 - - amidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_006130_010 Hb_006130_010 Hb_001832_190 Hb_001832_190 Hb_006130_010--Hb_001832_190 Hb_014720_160 Hb_014720_160 Hb_006130_010--Hb_014720_160 Hb_000922_330 Hb_000922_330 Hb_006130_010--Hb_000922_330 Hb_001855_010 Hb_001855_010 Hb_006130_010--Hb_001855_010 Hb_005754_060 Hb_005754_060 Hb_006130_010--Hb_005754_060 Hb_073171_110 Hb_073171_110 Hb_006130_010--Hb_073171_110 Hb_001832_190--Hb_000922_330 Hb_001832_190--Hb_014720_160 Hb_000085_060 Hb_000085_060 Hb_001832_190--Hb_000085_060 Hb_001350_010 Hb_001350_010 Hb_001832_190--Hb_001350_010 Hb_000567_360 Hb_000567_360 Hb_001832_190--Hb_000567_360 Hb_014720_160--Hb_000922_330 Hb_007547_010 Hb_007547_010 Hb_014720_160--Hb_007547_010 Hb_014720_160--Hb_000085_060 Hb_003609_040 Hb_003609_040 Hb_014720_160--Hb_003609_040 Hb_000001_020 Hb_000001_020 Hb_014720_160--Hb_000001_020 Hb_005662_030 Hb_005662_030 Hb_014720_160--Hb_005662_030 Hb_003641_050 Hb_003641_050 Hb_000922_330--Hb_003641_050 Hb_000922_330--Hb_000085_060 Hb_000679_130 Hb_000679_130 Hb_000922_330--Hb_000679_130 Hb_000922_330--Hb_005662_030 Hb_002527_030 Hb_002527_030 Hb_000922_330--Hb_002527_030 Hb_001135_160 Hb_001135_160 Hb_001855_010--Hb_001135_160 Hb_000023_140 Hb_000023_140 Hb_001855_010--Hb_000023_140 Hb_014568_030 Hb_014568_030 Hb_001855_010--Hb_014568_030 Hb_005063_040 Hb_005063_040 Hb_001855_010--Hb_005063_040 Hb_001855_010--Hb_005754_060 Hb_071736_010 Hb_071736_010 Hb_001855_010--Hb_071736_010 Hb_009048_040 Hb_009048_040 Hb_005754_060--Hb_009048_040 Hb_005754_060--Hb_071736_010 Hb_005883_050 Hb_005883_050 Hb_005754_060--Hb_005883_050 Hb_000395_170 Hb_000395_170 Hb_005754_060--Hb_000395_170 Hb_005754_060--Hb_000023_140 Hb_001454_210 Hb_001454_210 Hb_005754_060--Hb_001454_210 Hb_012340_010 Hb_012340_010 Hb_073171_110--Hb_012340_010 Hb_003030_020 Hb_003030_020 Hb_073171_110--Hb_003030_020 Hb_000556_080 Hb_000556_080 Hb_073171_110--Hb_000556_080 Hb_073171_110--Hb_009048_040 Hb_000997_210 Hb_000997_210 Hb_073171_110--Hb_000997_210 Hb_012055_020 Hb_012055_020 Hb_073171_110--Hb_012055_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.3577 1.57738 9.77959 9.7187 35.1386 33.6666
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.811 16.2073 22.2623 8.16103 15.1756

CAGE analysis