Hb_006130_020

Information

Type -
Description -
Location Contig6130: 49826-52159
Sequence    

Annotation

kegg
ID rcu:RCOM_1557970
description S-adenosylmethionine-dependent methyltransferase, putative
nr
ID XP_002526980.1
description S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SLW1
description S-adenosylmethionine-dependent methyltransferase, putative OS=Ricinus communis GN=RCOM_1557970 PE=4 SV=1
Gene Ontology
ID GO:0008168
description s-adenosyl-l-methionine-dependent methyltransferases superfamily protein isoform 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006130_020 0.0 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
2 Hb_000402_020 0.1070981988 - - PREDICTED: 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_003752_090 0.1105256657 - - chitinase, putative [Ricinus communis]
4 Hb_000076_250 0.1219284093 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000996_080 0.1222905882 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
6 Hb_007904_060 0.1233172536 - - PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1 [Jatropha curcas]
7 Hb_000056_310 0.1238351187 - - PREDICTED: uncharacterized protein LOC105630433 [Jatropha curcas]
8 Hb_001047_180 0.1244731539 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003020_250 0.1258715808 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Jatropha curcas]
10 Hb_012180_060 0.1272824341 - - peptidase, putative [Ricinus communis]
11 Hb_005333_200 0.1302525689 - - PREDICTED: beta carbonic anhydrase 5, chloroplastic-like [Jatropha curcas]
12 Hb_000212_250 0.1322029421 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005784_030 0.1341986185 - - PREDICTED: uncharacterized protein LOC105645162 isoform X2 [Jatropha curcas]
14 Hb_001587_040 0.1343258568 - - PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
15 Hb_001365_030 0.1353124396 - - PREDICTED: uncharacterized protein LOC102609547 [Citrus sinensis]
16 Hb_003640_050 0.1376765952 - - PREDICTED: protein LUTEIN DEFICIENT 5, chloroplastic isoform X2 [Jatropha curcas]
17 Hb_000327_200 0.1393844253 - - glutathione-s-transferase omega, putative [Ricinus communis]
18 Hb_000465_440 0.1415723877 - - PREDICTED: polycomb group protein EMBRYONIC FLOWER 2-like [Jatropha curcas]
19 Hb_000061_250 0.1436453355 - - hypothetical protein JCGZ_11665 [Jatropha curcas]
20 Hb_000749_200 0.1446097467 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_006130_020 Hb_006130_020 Hb_000402_020 Hb_000402_020 Hb_006130_020--Hb_000402_020 Hb_003752_090 Hb_003752_090 Hb_006130_020--Hb_003752_090 Hb_000076_250 Hb_000076_250 Hb_006130_020--Hb_000076_250 Hb_000996_080 Hb_000996_080 Hb_006130_020--Hb_000996_080 Hb_007904_060 Hb_007904_060 Hb_006130_020--Hb_007904_060 Hb_000056_310 Hb_000056_310 Hb_006130_020--Hb_000056_310 Hb_005618_080 Hb_005618_080 Hb_000402_020--Hb_005618_080 Hb_005116_100 Hb_005116_100 Hb_000402_020--Hb_005116_100 Hb_001959_060 Hb_001959_060 Hb_000402_020--Hb_001959_060 Hb_000402_020--Hb_003752_090 Hb_006829_080 Hb_006829_080 Hb_000402_020--Hb_006829_080 Hb_000402_020--Hb_000056_310 Hb_009288_040 Hb_009288_040 Hb_003752_090--Hb_009288_040 Hb_003994_080 Hb_003994_080 Hb_003752_090--Hb_003994_080 Hb_003020_250 Hb_003020_250 Hb_003752_090--Hb_003020_250 Hb_005665_090 Hb_005665_090 Hb_003752_090--Hb_005665_090 Hb_002759_120 Hb_002759_120 Hb_003752_090--Hb_002759_120 Hb_001649_030 Hb_001649_030 Hb_003752_090--Hb_001649_030 Hb_000388_080 Hb_000388_080 Hb_000076_250--Hb_000388_080 Hb_003640_050 Hb_003640_050 Hb_000076_250--Hb_003640_050 Hb_000032_410 Hb_000032_410 Hb_000076_250--Hb_000032_410 Hb_000076_250--Hb_000996_080 Hb_000076_250--Hb_003020_250 Hb_000689_050 Hb_000689_050 Hb_000076_250--Hb_000689_050 Hb_000996_080--Hb_003020_250 Hb_000940_030 Hb_000940_030 Hb_000996_080--Hb_000940_030 Hb_000327_200 Hb_000327_200 Hb_000996_080--Hb_000327_200 Hb_000310_060 Hb_000310_060 Hb_000996_080--Hb_000310_060 Hb_000996_080--Hb_000689_050 Hb_001587_040 Hb_001587_040 Hb_000996_080--Hb_001587_040 Hb_005784_030 Hb_005784_030 Hb_007904_060--Hb_005784_030 Hb_158092_100 Hb_158092_100 Hb_007904_060--Hb_158092_100 Hb_000108_150 Hb_000108_150 Hb_007904_060--Hb_000108_150 Hb_006420_010 Hb_006420_010 Hb_007904_060--Hb_006420_010 Hb_007904_060--Hb_003020_250 Hb_007904_060--Hb_003752_090 Hb_148146_010 Hb_148146_010 Hb_000056_310--Hb_148146_010 Hb_006252_030 Hb_006252_030 Hb_000056_310--Hb_006252_030 Hb_000056_310--Hb_005618_080 Hb_000009_020 Hb_000009_020 Hb_000056_310--Hb_000009_020 Hb_001953_100 Hb_001953_100 Hb_000056_310--Hb_001953_100 Hb_000749_200 Hb_000749_200 Hb_000056_310--Hb_000749_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.04205 3.50791 25.1645 11.2309 1.07531 4.29154
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.32543 2.74183 1.36811 3.64492 17.2193

CAGE analysis