Hb_006132_020

Information

Type -
Description -
Location Contig6132: 6863-11350
Sequence    

Annotation

kegg
ID pop:POPTR_0002s16160g
description POPTRDRAFT_816599; hypothetical protein
nr
ID XP_011023322.1
description PREDICTED: U-box domain-containing protein 37-like isoform X1 [Populus euphratica]
swissprot
ID Q8GUH1
description U-box domain-containing protein 33 OS=Arabidopsis thaliana GN=PUB33 PE=2 SV=2
trembl
ID B9GQA0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s16160g PE=3 SV=1
Gene Ontology
ID GO:0000166
description u-box domain-containing protein 33-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51101: 10646-10858 , PASA_asmbl_51102: 10860-20277
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006132_020 0.0 - - PREDICTED: U-box domain-containing protein 37-like isoform X1 [Populus euphratica]
2 Hb_000200_110 0.1487856878 - - PREDICTED: ATP-dependent RNA helicase DHX36 isoform X1 [Jatropha curcas]
3 Hb_001488_040 0.149247903 - - PREDICTED: nipped-B-like protein A [Jatropha curcas]
4 Hb_001341_160 0.1507980885 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X2 [Jatropha curcas]
5 Hb_002005_120 0.1511090986 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
6 Hb_002233_020 0.1521110017 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
7 Hb_000617_190 0.1521645767 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase [Jatropha curcas]
8 Hb_005765_040 0.1533802599 - - transcription elongation factor s-II, putative [Ricinus communis]
9 Hb_003604_050 0.1546960616 - - PREDICTED: MAP3K epsilon protein kinase 1-like isoform X2 [Jatropha curcas]
10 Hb_000170_100 0.1552816872 transcription factor TF Family: C3H hypothetical protein JCGZ_12159 [Jatropha curcas]
11 Hb_002600_080 0.1561005537 - - nucleic acid binding protein, putative [Ricinus communis]
12 Hb_001662_180 0.1561112275 - - PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5 [Citrus sinensis]
13 Hb_027337_090 0.1564487901 - - PREDICTED: sodium/hydrogen exchanger 7-like [Malus domestica]
14 Hb_000126_070 0.1600720145 - - putative leucine-rich repeat receptor-like serine/threonine-protein kinase [Gossypium arboreum]
15 Hb_003398_070 0.1601733262 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 9 [Jatropha curcas]
16 Hb_000928_090 0.161377339 - - PREDICTED: septin and tuftelin-interacting protein 1 homolog 1 [Jatropha curcas]
17 Hb_000866_090 0.1621267266 - - PREDICTED: U-box domain-containing protein 33-like isoform X3 [Jatropha curcas]
18 Hb_000473_150 0.1621816428 - - PREDICTED: pullulanase 1, chloroplastic [Jatropha curcas]
19 Hb_000081_120 0.1626472779 - - H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis]
20 Hb_000866_080 0.163463946 - - PREDICTED: signal peptide peptidase-like 4 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_006132_020 Hb_006132_020 Hb_000200_110 Hb_000200_110 Hb_006132_020--Hb_000200_110 Hb_001488_040 Hb_001488_040 Hb_006132_020--Hb_001488_040 Hb_001341_160 Hb_001341_160 Hb_006132_020--Hb_001341_160 Hb_002005_120 Hb_002005_120 Hb_006132_020--Hb_002005_120 Hb_002233_020 Hb_002233_020 Hb_006132_020--Hb_002233_020 Hb_000617_190 Hb_000617_190 Hb_006132_020--Hb_000617_190 Hb_001477_020 Hb_001477_020 Hb_000200_110--Hb_001477_020 Hb_000220_120 Hb_000220_120 Hb_000200_110--Hb_000220_120 Hb_000428_030 Hb_000428_030 Hb_000200_110--Hb_000428_030 Hb_000243_400 Hb_000243_400 Hb_000200_110--Hb_000243_400 Hb_000331_100 Hb_000331_100 Hb_000200_110--Hb_000331_100 Hb_143629_020 Hb_143629_020 Hb_000200_110--Hb_143629_020 Hb_001862_110 Hb_001862_110 Hb_001488_040--Hb_001862_110 Hb_000699_210 Hb_000699_210 Hb_001488_040--Hb_000699_210 Hb_009486_160 Hb_009486_160 Hb_001488_040--Hb_009486_160 Hb_001427_150 Hb_001427_150 Hb_001488_040--Hb_001427_150 Hb_011249_060 Hb_011249_060 Hb_001488_040--Hb_011249_060 Hb_005765_040 Hb_005765_040 Hb_001488_040--Hb_005765_040 Hb_003604_050 Hb_003604_050 Hb_001341_160--Hb_003604_050 Hb_000172_340 Hb_000172_340 Hb_001341_160--Hb_000172_340 Hb_000010_420 Hb_000010_420 Hb_001341_160--Hb_000010_420 Hb_001904_030 Hb_001904_030 Hb_001341_160--Hb_001904_030 Hb_004223_160 Hb_004223_160 Hb_001341_160--Hb_004223_160 Hb_008948_140 Hb_008948_140 Hb_001341_160--Hb_008948_140 Hb_014720_020 Hb_014720_020 Hb_002005_120--Hb_014720_020 Hb_065500_030 Hb_065500_030 Hb_002005_120--Hb_065500_030 Hb_000917_100 Hb_000917_100 Hb_002005_120--Hb_000917_100 Hb_002005_120--Hb_003604_050 Hb_002016_060 Hb_002016_060 Hb_002005_120--Hb_002016_060 Hb_003120_070 Hb_003120_070 Hb_002005_120--Hb_003120_070 Hb_000866_370 Hb_000866_370 Hb_002233_020--Hb_000866_370 Hb_003398_070 Hb_003398_070 Hb_002233_020--Hb_003398_070 Hb_000010_350 Hb_000010_350 Hb_002233_020--Hb_000010_350 Hb_089100_040 Hb_089100_040 Hb_002233_020--Hb_089100_040 Hb_001377_250 Hb_001377_250 Hb_002233_020--Hb_001377_250 Hb_003060_090 Hb_003060_090 Hb_002233_020--Hb_003060_090 Hb_000665_260 Hb_000665_260 Hb_000617_190--Hb_000665_260 Hb_012539_110 Hb_012539_110 Hb_000617_190--Hb_012539_110 Hb_013358_060 Hb_013358_060 Hb_000617_190--Hb_013358_060 Hb_000856_300 Hb_000856_300 Hb_000617_190--Hb_000856_300 Hb_000035_100 Hb_000035_100 Hb_000617_190--Hb_000035_100 Hb_002600_080 Hb_002600_080 Hb_000617_190--Hb_002600_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.795438 10.9243 3.1651 2.01447 2.80273 2.72128
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.8855 1.27496 0.696128 5.50183 4.73581

CAGE analysis