Hb_006132_030

Information

Type -
Description -
Location Contig6132: 12636-20187
Sequence    

Annotation

kegg
ID crb:CARUB_v10012126mg
description hypothetical protein
nr
ID XP_006306270.1
description hypothetical protein CARUB_v10012126mg, partial [Capsella rubella]
swissprot
ID -
description -
trembl
ID M0ZG67
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400000043 PE=4 SV=1
Gene Ontology
ID GO:0016772
description receptor protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51102: 10860-20277
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006132_030 0.0 - - hypothetical protein CARUB_v10012126mg, partial [Capsella rubella]
2 Hb_005344_030 0.1901736242 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Jatropha curcas]
3 Hb_011484_010 0.2006913476 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
4 Hb_000154_010 0.2243330587 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_133820_010 0.2251865225 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
6 Hb_000702_080 0.2295195046 - - PREDICTED: uncharacterized protein LOC105630492 [Jatropha curcas]
7 Hb_000052_020 0.2365512151 desease resistance Gene Name: ABC_tran PREDICTED: LOW QUALITY PROTEIN: ABC transporter G family member 2-like [Jatropha curcas]
8 Hb_003005_040 0.2381352001 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_011310_080 0.2400823712 - - hypothetical protein POPTR_0006s26840g [Populus trichocarpa]
10 Hb_004241_020 0.2462222434 - - PREDICTED: DAG protein, chloroplastic-like [Jatropha curcas]
11 Hb_001229_020 0.248320119 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
12 Hb_000122_210 0.248955514 - - -
13 Hb_001490_030 0.2501408461 - - PREDICTED: psbP domain-containing protein 6, chloroplastic [Jatropha curcas]
14 Hb_008698_010 0.2514762068 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Jatropha curcas]
15 Hb_000160_320 0.2519618678 - - hypothetical protein POPTR_0004s08730g [Populus trichocarpa]
16 Hb_000297_150 0.2521387444 - - PREDICTED: uncharacterized protein LOC103500908 [Cucumis melo]
17 Hb_000120_040 0.2534771522 - - -
18 Hb_001284_010 0.2547127513 - - hypothetical protein CISIN_1g0279981mg, partial [Citrus sinensis]
19 Hb_002534_030 0.2554804236 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
20 Hb_003734_110 0.2561404757 - - PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein [Jatropha curcas]

Gene co-expression network

sample Hb_006132_030 Hb_006132_030 Hb_005344_030 Hb_005344_030 Hb_006132_030--Hb_005344_030 Hb_011484_010 Hb_011484_010 Hb_006132_030--Hb_011484_010 Hb_000154_010 Hb_000154_010 Hb_006132_030--Hb_000154_010 Hb_133820_010 Hb_133820_010 Hb_006132_030--Hb_133820_010 Hb_000702_080 Hb_000702_080 Hb_006132_030--Hb_000702_080 Hb_000052_020 Hb_000052_020 Hb_006132_030--Hb_000052_020 Hb_002918_050 Hb_002918_050 Hb_005344_030--Hb_002918_050 Hb_005344_030--Hb_000052_020 Hb_000429_090 Hb_000429_090 Hb_005344_030--Hb_000429_090 Hb_000622_240 Hb_000622_240 Hb_005344_030--Hb_000622_240 Hb_091194_010 Hb_091194_010 Hb_005344_030--Hb_091194_010 Hb_000399_010 Hb_000399_010 Hb_011484_010--Hb_000399_010 Hb_020334_010 Hb_020334_010 Hb_011484_010--Hb_020334_010 Hb_026239_010 Hb_026239_010 Hb_011484_010--Hb_026239_010 Hb_000853_410 Hb_000853_410 Hb_011484_010--Hb_000853_410 Hb_061802_010 Hb_061802_010 Hb_011484_010--Hb_061802_010 Hb_004650_060 Hb_004650_060 Hb_000154_010--Hb_004650_060 Hb_000154_010--Hb_133820_010 Hb_043708_010 Hb_043708_010 Hb_000154_010--Hb_043708_010 Hb_000160_320 Hb_000160_320 Hb_000154_010--Hb_000160_320 Hb_036988_010 Hb_036988_010 Hb_000154_010--Hb_036988_010 Hb_131102_010 Hb_131102_010 Hb_133820_010--Hb_131102_010 Hb_122556_010 Hb_122556_010 Hb_133820_010--Hb_122556_010 Hb_133820_010--Hb_011484_010 Hb_086077_020 Hb_086077_020 Hb_133820_010--Hb_086077_020 Hb_004241_020 Hb_004241_020 Hb_000702_080--Hb_004241_020 Hb_005237_050 Hb_005237_050 Hb_000702_080--Hb_005237_050 Hb_000107_570 Hb_000107_570 Hb_000702_080--Hb_000107_570 Hb_002217_260 Hb_002217_260 Hb_000702_080--Hb_002217_260 Hb_000130_260 Hb_000130_260 Hb_000702_080--Hb_000130_260 Hb_000297_150 Hb_000297_150 Hb_000702_080--Hb_000297_150 Hb_000052_020--Hb_002918_050 Hb_003734_110 Hb_003734_110 Hb_000052_020--Hb_003734_110 Hb_042202_050 Hb_042202_050 Hb_000052_020--Hb_042202_050 Hb_007747_210 Hb_007747_210 Hb_000052_020--Hb_007747_210 Hb_001284_010 Hb_001284_010 Hb_000052_020--Hb_001284_010 Hb_000997_360 Hb_000997_360 Hb_000052_020--Hb_000997_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0374196 0.0691349 0.0379761 0 0.0156092 0.0637864
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.152119 0.14958 0.167405 0.0239448 0.372567

CAGE analysis