Hb_006132_060

Information

Type -
Description -
Location Contig6132: 47178-51282
Sequence    

Annotation

kegg
ID pop:POPTR_0014s08130g
description POPTRDRAFT_834747; phospholipid/glycerol acyltransferase family protein
nr
ID XP_002320138.1
description phospholipid/glycerol acyltransferase family protein [Populus trichocarpa]
swissprot
ID Q5XF03
description Probable glycerol-3-phosphate acyltransferase 8 OS=Arabidopsis thaliana GN=GPAT8 PE=2 SV=1
trembl
ID B9I8K6
description Phospholipid/glycerol acyltransferase family protein OS=Populus trichocarpa GN=POPTR_0014s08130g PE=4 SV=1
Gene Ontology
ID GO:0005783
description probable glycerol-3-phosphate acyltransferase 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51108: 47171-51281 , PASA_asmbl_51109: 47224-48194
cDNA
(Sanger)
(ID:Location)		 005_F10.ab1: 47171-50381 , 032_C02.ab1: 47183-50411 , 032_J19.ab1: 47258-47880 , 047_D08.ab1: 47183-50439 , 050_F22.ab1: 47171-50307

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006132_060 0.0 - - phospholipid/glycerol acyltransferase family protein [Populus trichocarpa]
2 Hb_000787_070 0.0861750762 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
3 Hb_000345_030 0.0969554742 - - REF-like stress related protein 1 [Hevea brasiliensis]
4 Hb_024505_040 0.1029893371 - - homogentisate geranylgeranyl transferase [Hevea brasiliensis]
5 Hb_002387_060 0.1034728762 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001584_300 0.1082760767 - - PREDICTED: pyroglutamyl-peptidase 1-like protein [Jatropha curcas]
7 Hb_005016_130 0.1095028593 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
8 Hb_000614_070 0.1111614596 - - -
9 Hb_001102_010 0.113272769 - - PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like isoform X2 [Glycine max]
10 Hb_025087_010 0.1144800238 - - PREDICTED: RING-H2 finger protein ATL56 [Jatropha curcas]
11 Hb_002282_020 0.1158280465 - - PREDICTED: uncharacterized protein LOC105629828 [Jatropha curcas]
12 Hb_000345_040 0.1158925958 rubber biosynthesis Gene Name: REF4 -
13 Hb_001366_230 0.1175084907 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002291_030 0.1180322336 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
15 Hb_000085_250 0.1186675292 - - sodium/hydrogen exchanger, putative [Ricinus communis]
16 Hb_008695_190 0.1191329056 transcription factor TF Family: ARF PREDICTED: auxin response factor 17 [Jatropha curcas]
17 Hb_012522_030 0.1197351291 - - ankyrin repeat-containing protein, putative [Ricinus communis]
18 Hb_003540_230 0.1202402987 - - PREDICTED: sphingosine kinase 1 isoform X1 [Jatropha curcas]
19 Hb_001722_040 0.1210167215 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
20 Hb_000419_040 0.1220325415 - - chorismate synthase [Hevea brasiliensis]

Gene co-expression network

sample Hb_006132_060 Hb_006132_060 Hb_000787_070 Hb_000787_070 Hb_006132_060--Hb_000787_070 Hb_000345_030 Hb_000345_030 Hb_006132_060--Hb_000345_030 Hb_024505_040 Hb_024505_040 Hb_006132_060--Hb_024505_040 Hb_002387_060 Hb_002387_060 Hb_006132_060--Hb_002387_060 Hb_001584_300 Hb_001584_300 Hb_006132_060--Hb_001584_300 Hb_005016_130 Hb_005016_130 Hb_006132_060--Hb_005016_130 Hb_000787_070--Hb_005016_130 Hb_115919_020 Hb_115919_020 Hb_000787_070--Hb_115919_020 Hb_001102_010 Hb_001102_010 Hb_000787_070--Hb_001102_010 Hb_000787_070--Hb_024505_040 Hb_000078_030 Hb_000078_030 Hb_000787_070--Hb_000078_030 Hb_000345_040 Hb_000345_040 Hb_000345_030--Hb_000345_040 Hb_004077_030 Hb_004077_030 Hb_000345_030--Hb_004077_030 Hb_000419_040 Hb_000419_040 Hb_000345_030--Hb_000419_040 Hb_000345_030--Hb_001584_300 Hb_002685_090 Hb_002685_090 Hb_000345_030--Hb_002685_090 Hb_001514_180 Hb_001514_180 Hb_024505_040--Hb_001514_180 Hb_000849_040 Hb_000849_040 Hb_024505_040--Hb_000849_040 Hb_024505_040--Hb_005016_130 Hb_000041_070 Hb_000041_070 Hb_024505_040--Hb_000041_070 Hb_000442_030 Hb_000442_030 Hb_024505_040--Hb_000442_030 Hb_012522_030 Hb_012522_030 Hb_002387_060--Hb_012522_030 Hb_015934_020 Hb_015934_020 Hb_002387_060--Hb_015934_020 Hb_000085_300 Hb_000085_300 Hb_002387_060--Hb_000085_300 Hb_183963_020 Hb_183963_020 Hb_002387_060--Hb_183963_020 Hb_000032_220 Hb_000032_220 Hb_002387_060--Hb_000032_220 Hb_002291_030 Hb_002291_030 Hb_002387_060--Hb_002291_030 Hb_000085_250 Hb_000085_250 Hb_001584_300--Hb_000085_250 Hb_002660_160 Hb_002660_160 Hb_001584_300--Hb_002660_160 Hb_001677_110 Hb_001677_110 Hb_001584_300--Hb_001677_110 Hb_002352_010 Hb_002352_010 Hb_001584_300--Hb_002352_010 Hb_005016_130--Hb_115919_020 Hb_005016_130--Hb_000078_030 Hb_001741_080 Hb_001741_080 Hb_005016_130--Hb_001741_080 Hb_010578_090 Hb_010578_090 Hb_005016_130--Hb_010578_090 Hb_000284_010 Hb_000284_010 Hb_005016_130--Hb_000284_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
400.767 15.6951 6.61017 87.5066 313.02 244.014
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
643.605 408.192 481.131 48.2486 11.2353

CAGE analysis