Hb_006133_010

Information

Type -
Description -
Location Contig6133: 2601-6474
Sequence    

Annotation

kegg
ID bvg:104898613
description uncharacterized LOC104898613
nr
ID XP_010684010.1
description PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID W9S8P4
description E3 ubiquitin-protein ligase UPL6 OS=Morus notabilis GN=L484_005974 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006133_010 0.0 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
2 Hb_004459_050 0.0630370314 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004807_040 0.0717123579 - - PREDICTED: uncharacterized protein LOC104420559 [Eucalyptus grandis]
4 Hb_002659_050 0.0771319678 - - PREDICTED: AT-hook motif nuclear-localized protein 10 isoform X3 [Jatropha curcas]
5 Hb_101097_010 0.078300502 - - polyprotein [Citrus endogenous pararetrovirus]
6 Hb_001289_050 0.0928506109 - - hypothetical protein Poptr_cp075 [Populus trichocarpa]
7 Hb_000270_040 0.1027927038 - - conserved hypothetical protein [Ricinus communis]
8 Hb_008948_130 0.1044869256 - - conserved hypothetical protein [Ricinus communis]
9 Hb_080791_010 0.1064534276 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
10 Hb_005348_050 0.1093118913 - - beta-galactosidase, putative [Ricinus communis]
11 Hb_000029_150 0.1101536867 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005483_050 0.1125631217 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000940_060 0.1137287529 - - hypothetical protein POPTR_0009s13250g [Populus trichocarpa]
14 Hb_000589_410 0.1147721002 - - PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic-like isoform X1 [Populus euphratica]
15 Hb_000026_060 0.1150615037 - - beta-1,3-glucanase [Manihot esculenta]
16 Hb_158597_010 0.115425509 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial [Jatropha curcas]
17 Hb_015807_020 0.1158598114 - - gibberellin 20-oxidase, putative [Ricinus communis]
18 Hb_000243_190 0.1158622298 transcription factor TF Family: MIKC flowering-related B-class MADS-box protein [Vitis vinifera]
19 Hb_005736_030 0.116666139 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
20 Hb_001310_020 0.118426247 - - PREDICTED: cyclin-D5-1-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_006133_010 Hb_006133_010 Hb_004459_050 Hb_004459_050 Hb_006133_010--Hb_004459_050 Hb_004807_040 Hb_004807_040 Hb_006133_010--Hb_004807_040 Hb_002659_050 Hb_002659_050 Hb_006133_010--Hb_002659_050 Hb_101097_010 Hb_101097_010 Hb_006133_010--Hb_101097_010 Hb_001289_050 Hb_001289_050 Hb_006133_010--Hb_001289_050 Hb_000270_040 Hb_000270_040 Hb_006133_010--Hb_000270_040 Hb_004459_050--Hb_002659_050 Hb_043935_010 Hb_043935_010 Hb_004459_050--Hb_043935_010 Hb_015807_020 Hb_015807_020 Hb_004459_050--Hb_015807_020 Hb_010381_080 Hb_010381_080 Hb_004459_050--Hb_010381_080 Hb_080791_010 Hb_080791_010 Hb_004459_050--Hb_080791_010 Hb_004807_040--Hb_001289_050 Hb_004807_040--Hb_101097_010 Hb_005736_030 Hb_005736_030 Hb_004807_040--Hb_005736_030 Hb_001310_020 Hb_001310_020 Hb_004807_040--Hb_001310_020 Hb_000029_150 Hb_000029_150 Hb_004807_040--Hb_000029_150 Hb_000589_410 Hb_000589_410 Hb_002659_050--Hb_000589_410 Hb_005348_050 Hb_005348_050 Hb_002659_050--Hb_005348_050 Hb_002659_050--Hb_043935_010 Hb_008948_130 Hb_008948_130 Hb_002659_050--Hb_008948_130 Hb_013405_240 Hb_013405_240 Hb_101097_010--Hb_013405_240 Hb_007416_250 Hb_007416_250 Hb_101097_010--Hb_007416_250 Hb_000530_060 Hb_000530_060 Hb_101097_010--Hb_000530_060 Hb_101097_010--Hb_000029_150 Hb_158597_010 Hb_158597_010 Hb_101097_010--Hb_158597_010 Hb_000282_100 Hb_000282_100 Hb_001289_050--Hb_000282_100 Hb_009093_020 Hb_009093_020 Hb_001289_050--Hb_009093_020 Hb_000841_040 Hb_000841_040 Hb_001289_050--Hb_000841_040 Hb_011381_120 Hb_011381_120 Hb_001289_050--Hb_011381_120 Hb_001579_050 Hb_001579_050 Hb_001289_050--Hb_001579_050 Hb_004855_030 Hb_004855_030 Hb_000270_040--Hb_004855_030 Hb_000083_010 Hb_000083_010 Hb_000270_040--Hb_000083_010 Hb_052139_010 Hb_052139_010 Hb_000270_040--Hb_052139_010 Hb_003208_010 Hb_003208_010 Hb_000270_040--Hb_003208_010 Hb_000977_260 Hb_000977_260 Hb_000270_040--Hb_000977_260 Hb_000270_040--Hb_101097_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.310934 0.201642 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0489203 1.3847

CAGE analysis