Hb_006133_020

Information

Type -
Description -
Location Contig6133: 7222-15662
Sequence    

Annotation

kegg
ID rcu:RCOM_1063380
description hypothetical protein
nr
ID XP_012072470.1
description PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
swissprot
ID Q9M548
description DNA (cytosine-5)-methyltransferase DRM2 OS=Arabidopsis thaliana GN=DRM2 PE=1 SV=1
trembl
ID A0A067LNJ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10275 PE=4 SV=1
Gene Ontology
ID GO:0008168
description dna (cytosine-5)-methyltransferase drm2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51124: 7236-15672 , PASA_asmbl_51125: 7245-14944
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006133_020 0.0 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
2 Hb_008511_040 0.0728933167 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
3 Hb_003020_190 0.0953446279 - - PREDICTED: methylsterol monooxygenase 2-2 [Jatropha curcas]
4 Hb_001862_050 0.1100812892 - - PREDICTED: lysine-rich arabinogalactan protein 18-like [Jatropha curcas]
5 Hb_000227_400 0.1109506783 - - lipoxygenase, putative [Ricinus communis]
6 Hb_001141_050 0.1112500753 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2 [Jatropha curcas]
7 Hb_000230_190 0.1114773815 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 isoform X1 [Jatropha curcas]
8 Hb_001123_310 0.112476573 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
9 Hb_018133_070 0.1133220212 - - PREDICTED: RING-H2 finger protein ATL43 [Jatropha curcas]
10 Hb_000069_300 0.1158599322 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
11 Hb_008053_030 0.1165165198 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]
12 Hb_001922_110 0.1171205353 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000958_120 0.1194793767 - - PREDICTED: uncharacterized protein LOC105646385 [Jatropha curcas]
14 Hb_047659_010 0.1209766261 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000207_350 0.1211524684 - - PREDICTED: embryogenesis-associated protein EMB8 [Jatropha curcas]
16 Hb_071674_010 0.1221124434 transcription factor TF Family: WRKY hypothetical protein POPTR_0006s10950g [Populus trichocarpa]
17 Hb_000465_410 0.1248655288 - - conserved hypothetical protein [Ricinus communis]
18 Hb_010381_040 0.1258909578 - - beta-galactosidase, putative [Ricinus communis]
19 Hb_001221_060 0.1265026607 - - PREDICTED: cycloeucalenol cycloisomerase [Jatropha curcas]
20 Hb_002965_160 0.1272432719 - - PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]

Gene co-expression network

sample Hb_006133_020 Hb_006133_020 Hb_008511_040 Hb_008511_040 Hb_006133_020--Hb_008511_040 Hb_003020_190 Hb_003020_190 Hb_006133_020--Hb_003020_190 Hb_001862_050 Hb_001862_050 Hb_006133_020--Hb_001862_050 Hb_000227_400 Hb_000227_400 Hb_006133_020--Hb_000227_400 Hb_001141_050 Hb_001141_050 Hb_006133_020--Hb_001141_050 Hb_000230_190 Hb_000230_190 Hb_006133_020--Hb_000230_190 Hb_000008_200 Hb_000008_200 Hb_008511_040--Hb_000008_200 Hb_000069_300 Hb_000069_300 Hb_008511_040--Hb_000069_300 Hb_008511_040--Hb_000227_400 Hb_001922_110 Hb_001922_110 Hb_008511_040--Hb_001922_110 Hb_001123_310 Hb_001123_310 Hb_008511_040--Hb_001123_310 Hb_010288_030 Hb_010288_030 Hb_003020_190--Hb_010288_030 Hb_071674_010 Hb_071674_010 Hb_003020_190--Hb_071674_010 Hb_003020_190--Hb_001862_050 Hb_000991_030 Hb_000991_030 Hb_003020_190--Hb_000991_030 Hb_007943_180 Hb_007943_180 Hb_003020_190--Hb_007943_180 Hb_002965_160 Hb_002965_160 Hb_001862_050--Hb_002965_160 Hb_004129_060 Hb_004129_060 Hb_001862_050--Hb_004129_060 Hb_001862_050--Hb_000069_300 Hb_047659_010 Hb_047659_010 Hb_001862_050--Hb_047659_010 Hb_000227_400--Hb_001922_110 Hb_010868_040 Hb_010868_040 Hb_000227_400--Hb_010868_040 Hb_004855_020 Hb_004855_020 Hb_000227_400--Hb_004855_020 Hb_000207_350 Hb_000207_350 Hb_000227_400--Hb_000207_350 Hb_000958_120 Hb_000958_120 Hb_000227_400--Hb_000958_120 Hb_000243_060 Hb_000243_060 Hb_000227_400--Hb_000243_060 Hb_001141_050--Hb_001922_110 Hb_000032_410 Hb_000032_410 Hb_001141_050--Hb_000032_410 Hb_000032_200 Hb_000032_200 Hb_001141_050--Hb_000032_200 Hb_000076_250 Hb_000076_250 Hb_001141_050--Hb_000076_250 Hb_003640_050 Hb_003640_050 Hb_001141_050--Hb_003640_050 Hb_000230_190--Hb_001141_050 Hb_000230_190--Hb_003020_190 Hb_001377_530 Hb_001377_530 Hb_000230_190--Hb_001377_530 Hb_000230_190--Hb_000958_120 Hb_000230_190--Hb_000069_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.33028 4.28141 29.2481 19.4862 0.819161 1.60066
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.25409 0.637628 1.15564 2.24405 11.5306

CAGE analysis