Hb_006142_050

Information

Type -
Description -
Location Contig6142: 39707-43295
Sequence    

Annotation

kegg
ID tcc:TCM_042545
description LRR receptor-like serine/threonine-protein kinase, putative
nr
ID XP_007009030.1
description LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID A0A061FKI4
description LRR receptor-like serine/threonine-protein kinase, putative OS=Theobroma cacao GN=TCM_042545 PE=4 SV=1
Gene Ontology
ID GO:0016020
description probable lrr receptor-like serine threonine-protein kinase at3g47570-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51168: 39794-40492
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006142_050 0.0 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
2 Hb_000237_120 0.105785807 - - PREDICTED: beta-galactosidase 3-like [Jatropha curcas]
3 Hb_032143_010 0.1097963959 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
4 Hb_007101_140 0.1110286522 - - hypothetical protein JCGZ_21777 [Jatropha curcas]
5 Hb_010264_010 0.120620118 - - PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1-like [Jatropha curcas]
6 Hb_000621_030 0.1268984871 - - PREDICTED: uncharacterized protein LOC105638736 isoform X1 [Jatropha curcas]
7 Hb_004162_140 0.1301595084 - - PREDICTED: serine carboxypeptidase-like 51 [Jatropha curcas]
8 Hb_004116_050 0.1304701469 - - PREDICTED: cytochrome P450 90A1 [Jatropha curcas]
9 Hb_000445_160 0.1311953267 - - PREDICTED: probable calcium-binding protein CML44 [Jatropha curcas]
10 Hb_000380_140 0.1319454342 - - PREDICTED: uncharacterized protein LOC105628069 [Jatropha curcas]
11 Hb_119443_010 0.1320759402 - - hypothetical protein JCGZ_17348 [Jatropha curcas]
12 Hb_000181_220 0.1382501798 - - PREDICTED: MATE efflux family protein LAL5-like isoform X2 [Jatropha curcas]
13 Hb_001488_350 0.139809645 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001405_040 0.139854773 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Jatropha curcas]
15 Hb_000416_090 0.1413148275 - - Aquaporin NIP1.1, putative [Ricinus communis]
16 Hb_039435_010 0.1416526419 - - hypothetical protein SORBIDRAFT_10g025530 [Sorghum bicolor]
17 Hb_000017_140 0.1425939892 - - polygalacturonase, putative [Ricinus communis]
18 Hb_000140_500 0.1431993341 - - ABC transporter family protein [Hevea brasiliensis]
19 Hb_001244_070 0.1438389176 - - hypothetical protein POPTR_0004s13470g [Populus trichocarpa]
20 Hb_001278_090 0.1439499666 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]

Gene co-expression network

sample Hb_006142_050 Hb_006142_050 Hb_000237_120 Hb_000237_120 Hb_006142_050--Hb_000237_120 Hb_032143_010 Hb_032143_010 Hb_006142_050--Hb_032143_010 Hb_007101_140 Hb_007101_140 Hb_006142_050--Hb_007101_140 Hb_010264_010 Hb_010264_010 Hb_006142_050--Hb_010264_010 Hb_000621_030 Hb_000621_030 Hb_006142_050--Hb_000621_030 Hb_004162_140 Hb_004162_140 Hb_006142_050--Hb_004162_140 Hb_181463_020 Hb_181463_020 Hb_000237_120--Hb_181463_020 Hb_167211_010 Hb_167211_010 Hb_000237_120--Hb_167211_010 Hb_001109_170 Hb_001109_170 Hb_000237_120--Hb_001109_170 Hb_001622_020 Hb_001622_020 Hb_000237_120--Hb_001622_020 Hb_000237_120--Hb_032143_010 Hb_032143_010--Hb_010264_010 Hb_000265_030 Hb_000265_030 Hb_032143_010--Hb_000265_030 Hb_001104_220 Hb_001104_220 Hb_032143_010--Hb_001104_220 Hb_005622_040 Hb_005622_040 Hb_032143_010--Hb_005622_040 Hb_032143_010--Hb_181463_020 Hb_000152_880 Hb_000152_880 Hb_007101_140--Hb_000152_880 Hb_007894_080 Hb_007894_080 Hb_007101_140--Hb_007894_080 Hb_000017_140 Hb_000017_140 Hb_007101_140--Hb_000017_140 Hb_029639_030 Hb_029639_030 Hb_007101_140--Hb_029639_030 Hb_000181_220 Hb_000181_220 Hb_007101_140--Hb_000181_220 Hb_007101_140--Hb_004162_140 Hb_010264_010--Hb_000017_140 Hb_001269_660 Hb_001269_660 Hb_010264_010--Hb_001269_660 Hb_010264_010--Hb_000265_030 Hb_000665_210 Hb_000665_210 Hb_010264_010--Hb_000665_210 Hb_010264_010--Hb_007101_140 Hb_002001_030 Hb_002001_030 Hb_000621_030--Hb_002001_030 Hb_004881_070 Hb_004881_070 Hb_000621_030--Hb_004881_070 Hb_162174_010 Hb_162174_010 Hb_000621_030--Hb_162174_010 Hb_000621_030--Hb_010264_010 Hb_004374_160 Hb_004374_160 Hb_000621_030--Hb_004374_160 Hb_004116_050 Hb_004116_050 Hb_000621_030--Hb_004116_050 Hb_002783_180 Hb_002783_180 Hb_004162_140--Hb_002783_180 Hb_001675_040 Hb_001675_040 Hb_004162_140--Hb_001675_040 Hb_004162_140--Hb_000152_880 Hb_000140_500 Hb_000140_500 Hb_004162_140--Hb_000140_500 Hb_168561_010 Hb_168561_010 Hb_004162_140--Hb_168561_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0117755 0.149868 0.192874 0 0.00549759
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.134833 0.295122

CAGE analysis