Hb_006147_020

Information

Type -
Description -
Location Contig6147: 14848-16481
Sequence    

Annotation

kegg
ID rcu:RCOM_1174750
description hypothetical protein
nr
ID XP_002517919.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID B9RW00
description CASP-like protein 1C1 OS=Ricinus communis GN=RCOM_1174750 PE=2 SV=1
trembl
ID A0A067JJI6
description CASP-like protein OS=Jatropha curcas GN=JCGZ_25788 PE=3 SV=1
Gene Ontology
ID GO:0005886
description casp-like protein 1c1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006147_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004392_030 0.0562804142 - - oxidoreductase family protein [Populus trichocarpa]
3 Hb_043935_010 0.072936491 - - Receptor protein kinase-like protein [Medicago truncatula]
4 Hb_012539_080 0.0838060861 - - Polyprotein, putative [Solanum demissum]
5 Hb_015817_010 0.0840965403 - - PREDICTED: putative receptor protein kinase ZmPK1 [Jatropha curcas]
6 Hb_010381_080 0.0865234006 - - cytochrome P450, putative [Ricinus communis]
7 Hb_080791_010 0.0892854562 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
8 Hb_004242_200 0.0913468273 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s44130g [Populus trichocarpa]
9 Hb_000026_060 0.0993865336 - - beta-1,3-glucanase [Manihot esculenta]
10 Hb_001300_240 0.1023338915 - - shikimate dehydrogenase, putative [Ricinus communis]
11 Hb_015978_090 0.1215933116 - - hypothetical protein POPTR_0014s11700g [Populus trichocarpa]
12 Hb_002659_050 0.1227202486 - - PREDICTED: AT-hook motif nuclear-localized protein 10 isoform X3 [Jatropha curcas]
13 Hb_114893_010 0.1232892301 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
14 Hb_004146_030 0.1245561718 - - UDP-glucosyltransferase, putative [Ricinus communis]
15 Hb_027654_010 0.1267530782 - - Isoamyl acetate-hydrolyzing esterase, putative [Ricinus communis]
16 Hb_026437_020 0.131584451 - - ring finger protein, putative [Ricinus communis]
17 Hb_002835_050 0.1374035976 - - PREDICTED: high-affinity nitrate transporter 3.1-like [Jatropha curcas]
18 Hb_004459_050 0.1382488332 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003171_040 0.1384773491 - - multidrug resistance pump, putative [Ricinus communis]
20 Hb_002762_050 0.1397667071 - - PREDICTED: uncharacterized protein LOC105640359 [Jatropha curcas]

Gene co-expression network

sample Hb_006147_020 Hb_006147_020 Hb_004392_030 Hb_004392_030 Hb_006147_020--Hb_004392_030 Hb_043935_010 Hb_043935_010 Hb_006147_020--Hb_043935_010 Hb_012539_080 Hb_012539_080 Hb_006147_020--Hb_012539_080 Hb_015817_010 Hb_015817_010 Hb_006147_020--Hb_015817_010 Hb_010381_080 Hb_010381_080 Hb_006147_020--Hb_010381_080 Hb_080791_010 Hb_080791_010 Hb_006147_020--Hb_080791_010 Hb_004392_030--Hb_012539_080 Hb_004392_030--Hb_043935_010 Hb_002835_050 Hb_002835_050 Hb_004392_030--Hb_002835_050 Hb_004392_030--Hb_010381_080 Hb_004392_030--Hb_015817_010 Hb_043935_010--Hb_015817_010 Hb_043935_010--Hb_012539_080 Hb_043935_010--Hb_010381_080 Hb_002659_050 Hb_002659_050 Hb_043935_010--Hb_002659_050 Hb_012539_080--Hb_002835_050 Hb_000907_130 Hb_000907_130 Hb_012539_080--Hb_000907_130 Hb_113379_010 Hb_113379_010 Hb_012539_080--Hb_113379_010 Hb_015817_010--Hb_080791_010 Hb_005029_030 Hb_005029_030 Hb_015817_010--Hb_005029_030 Hb_000026_060 Hb_000026_060 Hb_015817_010--Hb_000026_060 Hb_004459_050 Hb_004459_050 Hb_015817_010--Hb_004459_050 Hb_004242_200 Hb_004242_200 Hb_010381_080--Hb_004242_200 Hb_114893_010 Hb_114893_010 Hb_010381_080--Hb_114893_010 Hb_001300_240 Hb_001300_240 Hb_010381_080--Hb_001300_240 Hb_010381_080--Hb_004459_050 Hb_080791_010--Hb_000026_060 Hb_002041_020 Hb_002041_020 Hb_080791_010--Hb_002041_020 Hb_080791_010--Hb_043935_010 Hb_000858_050 Hb_000858_050 Hb_080791_010--Hb_000858_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0773458 5.84483 1.73421 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.3114 15.1878

CAGE analysis