Hb_006153_020

Information

Type -
Description -
Location Contig6153: 24657-28694
Sequence    

Annotation

kegg
ID rcu:RCOM_0195660
description Acid beta-fructofuranosidase precursor, putative (EC:3.2.1.26)
nr
ID AFH77957.1
description vacuolar invertase [Manihot esculenta]
swissprot
ID P29001
description Acid beta-fructofuranosidase OS=Vigna radiata var. radiata GN=INVA PE=1 SV=1
trembl
ID I0CL57
description Vacuolar invertase OS=Manihot esculenta GN=VINV2 PE=2 SV=1
Gene Ontology
ID GO:0004575
description acid beta-fructofuranosidase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51177: 24660-28528 , PASA_asmbl_51178: 24660-28528 , PASA_asmbl_51179: 27460-28137
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006153_020 0.0 - - vacuolar invertase [Manihot esculenta]
2 Hb_001221_050 0.075149347 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Jatropha curcas]
3 Hb_005946_200 0.0839845841 - - hypothetical protein POPTR_0006s16210g [Populus trichocarpa]
4 Hb_004109_110 0.0906830736 - - dioxygenase family protein [Populus trichocarpa]
5 Hb_021576_160 0.0937484579 transcription factor TF Family: WRKY putative WRKY transcription factor family protein [Populus trichocarpa]
6 Hb_006002_020 0.0944092409 - - PREDICTED: cytokinin dehydrogenase 7 [Jatropha curcas]
7 Hb_001333_030 0.0967148599 - - Abscisic acid 8'-hydroxylase 1 [Theobroma cacao]
8 Hb_003427_020 0.1087632767 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X1 [Jatropha curcas]
9 Hb_000047_010 0.1093869911 - - PREDICTED: expansin-like A1 [Jatropha curcas]
10 Hb_002811_320 0.1123874369 - - cation-transporting atpase plant, putative [Ricinus communis]
11 Hb_001022_070 0.1147688708 - - cell wall invertase [Manihot esculenta]
12 Hb_000418_060 0.1186872197 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
13 Hb_002804_070 0.1258505423 - - hypothetical protein JCGZ_05701 [Jatropha curcas]
14 Hb_155015_020 0.1285030624 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
15 Hb_001518_030 0.1289597377 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
16 Hb_029622_090 0.1301874432 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 2-like [Jatropha curcas]
17 Hb_002303_050 0.1323696459 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor PTL-like [Populus euphratica]
18 Hb_002400_040 0.1326540493 - - PREDICTED: uncharacterized protein LOC105637633 [Jatropha curcas]
19 Hb_001198_170 0.1340437855 - - -
20 Hb_011028_040 0.1374871674 - - receptor serine/threonine kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_006153_020 Hb_006153_020 Hb_001221_050 Hb_001221_050 Hb_006153_020--Hb_001221_050 Hb_005946_200 Hb_005946_200 Hb_006153_020--Hb_005946_200 Hb_004109_110 Hb_004109_110 Hb_006153_020--Hb_004109_110 Hb_021576_160 Hb_021576_160 Hb_006153_020--Hb_021576_160 Hb_006002_020 Hb_006002_020 Hb_006153_020--Hb_006002_020 Hb_001333_030 Hb_001333_030 Hb_006153_020--Hb_001333_030 Hb_001221_050--Hb_005946_200 Hb_003427_020 Hb_003427_020 Hb_001221_050--Hb_003427_020 Hb_001221_050--Hb_021576_160 Hb_002804_070 Hb_002804_070 Hb_001221_050--Hb_002804_070 Hb_001221_050--Hb_001333_030 Hb_002303_050 Hb_002303_050 Hb_005946_200--Hb_002303_050 Hb_005946_200--Hb_002804_070 Hb_001022_070 Hb_001022_070 Hb_005946_200--Hb_001022_070 Hb_002811_320 Hb_002811_320 Hb_005946_200--Hb_002811_320 Hb_000047_010 Hb_000047_010 Hb_004109_110--Hb_000047_010 Hb_004109_110--Hb_006002_020 Hb_004109_110--Hb_021576_160 Hb_001518_030 Hb_001518_030 Hb_004109_110--Hb_001518_030 Hb_024650_010 Hb_024650_010 Hb_004109_110--Hb_024650_010 Hb_021576_160--Hb_003427_020 Hb_021576_160--Hb_001333_030 Hb_021576_160--Hb_005946_200 Hb_029622_090 Hb_029622_090 Hb_021576_160--Hb_029622_090 Hb_000418_060 Hb_000418_060 Hb_006002_020--Hb_000418_060 Hb_006002_020--Hb_000047_010 Hb_002725_080 Hb_002725_080 Hb_006002_020--Hb_002725_080 Hb_010417_110 Hb_010417_110 Hb_006002_020--Hb_010417_110 Hb_011028_040 Hb_011028_040 Hb_001333_030--Hb_011028_040 Hb_001333_030--Hb_003427_020 Hb_001333_030--Hb_001022_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.109285 143.086 112.168 180.818 0.101123 0.214213
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.184705 1.55514 2.10392 1.54146 37.7163

CAGE analysis