Hb_006153_070

Information

Type -
Description -
Location Contig6153: 74657-81334
Sequence    

Annotation

kegg
ID rcu:RCOM_0251360
description Ketoacyl-ACP Synthase III (KAS III) (EC:2.3.1.41)
nr
ID NP_001292956.1
description 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Jatropha curcas]
swissprot
ID P49244
description 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic OS=Cuphea wrightii GN=KAS3A PE=2 SV=2
trembl
ID Q000L1
description Beta-ketoacyl-ACP synthase III OS=Jatropha curcas GN=JCGZ_20790 PE=2 SV=1
Gene Ontology
ID GO:0004315
description 3-oxoacyl-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51184: 74603-81316 , PASA_asmbl_51185: 75081-75451
cDNA
(Sanger)
(ID:Location)		 009_M21.ab1: 78435-81316 , 014_E23.ab1: 78341-81022 , 018_H06.ab1: 78426-81316 , 035_O03.ab1: 78446-81316 , 038_J09.ab1: 78434-81316 , 046_M24.ab1: 77341-81022

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006153_070 0.0 - - 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Jatropha curcas]
2 Hb_009898_050 0.0422927322 - - PREDICTED: beta-taxilin [Jatropha curcas]
3 Hb_000110_310 0.057613275 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]
4 Hb_007831_010 0.0588978186 - - PREDICTED: oligoribonuclease [Vitis vinifera]
5 Hb_168978_030 0.0659635143 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 8 [Jatropha curcas]
6 Hb_000640_170 0.0675415349 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
7 Hb_000579_120 0.0740906132 - - PREDICTED: uncharacterized protein LOC105633845 [Jatropha curcas]
8 Hb_001366_370 0.0749526496 - - PREDICTED: aarF domain-containing protein kinase 4 isoform X1 [Jatropha curcas]
9 Hb_008616_050 0.075941437 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
10 Hb_000915_260 0.0760943097 - - PREDICTED: uncharacterized protein LOC105628514 isoform X1 [Jatropha curcas]
11 Hb_000035_470 0.0794854459 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
12 Hb_006588_170 0.0805208816 - - PREDICTED: OTU domain-containing protein At3g57810 [Jatropha curcas]
13 Hb_041290_020 0.0812652864 - - PREDICTED: centromere/kinetochore protein zw10 homolog isoform X2 [Jatropha curcas]
14 Hb_001357_350 0.0814576295 - - conserved hypothetical protein [Ricinus communis]
15 Hb_012498_010 0.0815238903 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]
16 Hb_000107_230 0.0833200859 - - unknown [Medicago truncatula]
17 Hb_000156_010 0.0833347385 - - phospho-n-acetylmuramoyl-pentapeptide-transferase, putative [Ricinus communis]
18 Hb_026198_070 0.0834112472 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
19 Hb_008970_030 0.084128982 - - arf gtpase-activating protein, putative [Ricinus communis]
20 Hb_001269_330 0.084261647 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]

Gene co-expression network

sample Hb_006153_070 Hb_006153_070 Hb_009898_050 Hb_009898_050 Hb_006153_070--Hb_009898_050 Hb_000110_310 Hb_000110_310 Hb_006153_070--Hb_000110_310 Hb_007831_010 Hb_007831_010 Hb_006153_070--Hb_007831_010 Hb_168978_030 Hb_168978_030 Hb_006153_070--Hb_168978_030 Hb_000640_170 Hb_000640_170 Hb_006153_070--Hb_000640_170 Hb_000579_120 Hb_000579_120 Hb_006153_070--Hb_000579_120 Hb_009898_050--Hb_000110_310 Hb_008616_050 Hb_008616_050 Hb_009898_050--Hb_008616_050 Hb_000915_260 Hb_000915_260 Hb_009898_050--Hb_000915_260 Hb_009898_050--Hb_000640_170 Hb_009898_050--Hb_000579_120 Hb_000110_310--Hb_000579_120 Hb_000270_680 Hb_000270_680 Hb_000110_310--Hb_000270_680 Hb_001472_100 Hb_001472_100 Hb_000110_310--Hb_001472_100 Hb_001268_240 Hb_001268_240 Hb_000110_310--Hb_001268_240 Hb_003430_050 Hb_003430_050 Hb_007831_010--Hb_003430_050 Hb_000207_150 Hb_000207_150 Hb_007831_010--Hb_000207_150 Hb_015807_050 Hb_015807_050 Hb_007831_010--Hb_015807_050 Hb_000107_230 Hb_000107_230 Hb_007831_010--Hb_000107_230 Hb_006588_170 Hb_006588_170 Hb_007831_010--Hb_006588_170 Hb_168978_030--Hb_000640_170 Hb_000035_470 Hb_000035_470 Hb_168978_030--Hb_000035_470 Hb_000617_180 Hb_000617_180 Hb_168978_030--Hb_000617_180 Hb_105328_020 Hb_105328_020 Hb_168978_030--Hb_105328_020 Hb_002044_150 Hb_002044_150 Hb_168978_030--Hb_002044_150 Hb_000156_010 Hb_000156_010 Hb_168978_030--Hb_000156_010 Hb_000640_170--Hb_000035_470 Hb_001599_040 Hb_001599_040 Hb_000640_170--Hb_001599_040 Hb_000640_170--Hb_000156_010 Hb_026198_070 Hb_026198_070 Hb_000640_170--Hb_026198_070 Hb_000058_130 Hb_000058_130 Hb_000579_120--Hb_000058_130 Hb_001232_190 Hb_001232_190 Hb_000579_120--Hb_001232_190 Hb_000976_120 Hb_000976_120 Hb_000579_120--Hb_000976_120 Hb_000579_120--Hb_000207_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.54067 4.27715 11.5981 12.6289 7.30242 12.2272
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.2029 9.03356 8.58688 10.2141 10.5691

CAGE analysis