Hb_006153_130

Information

Type transcription factor
Description TF Family: WRKY
Location Contig6153: 117566-119095
Sequence    

Annotation

kegg
ID rcu:RCOM_0251190
description WRKY transcription factor, putative
nr
ID XP_002529783.1
description WRKY transcription factor, putative [Ricinus communis]
swissprot
ID O22176
description Probable WRKY transcription factor 15 OS=Arabidopsis thaliana GN=WRKY15 PE=2 SV=1
trembl
ID B9SUX2
description WRKY transcription factor, putative OS=Ricinus communis GN=RCOM_0251190 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 17 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51195: 117160-117636 , PASA_asmbl_51196: 118080-119107
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006153_130 0.0 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
2 Hb_000210_140 0.0805298026 - - PREDICTED: uncharacterized protein LOC105635827 [Jatropha curcas]
3 Hb_001856_160 0.0930666345 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002236_010 0.1062688481 - - PREDICTED: bidirectional sugar transporter SWEET4 [Jatropha curcas]
5 Hb_007625_030 0.1188013615 - - unknown [Medicago truncatula]
6 Hb_000847_050 0.1197947876 - - PREDICTED: dCTP pyrophosphatase 1-like [Jatropha curcas]
7 Hb_009615_100 0.1249799923 - - hypothetical protein JCGZ_24459 [Jatropha curcas]
8 Hb_003376_300 0.128064585 - - Aquaporin PIP2.2, putative [Ricinus communis]
9 Hb_000454_200 0.1325446138 - - PREDICTED: indole-3-acetic acid-induced protein ARG7 [Jatropha curcas]
10 Hb_005679_120 0.1333607826 - - hypothetical protein RCOM_0284080 [Ricinus communis]
11 Hb_023956_010 0.1353170153 - - glutathione s-transferase, putative [Ricinus communis]
12 Hb_002553_070 0.1355008752 - - PREDICTED: RING-H2 finger protein ATL16 [Jatropha curcas]
13 Hb_043789_010 0.1393211678 transcription factor TF Family: AP2 hypothetical protein VITISV_034131 [Vitis vinifera]
14 Hb_000070_070 0.1402523404 - - PREDICTED: protein LURP-one-related 17 [Jatropha curcas]
15 Hb_000069_520 0.1430412615 - - PREDICTED: transcription factor TRY-like [Jatropha curcas]
16 Hb_005087_030 0.1441796998 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
17 Hb_130967_010 0.1443926781 - - UDP-glucosyltransferase, putative [Ricinus communis]
18 Hb_000111_190 0.1448932325 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1 [Jatropha curcas]
19 Hb_003847_050 0.1463665778 - - PREDICTED: aquaporin SIP1-1 [Jatropha curcas]
20 Hb_183209_020 0.1467838275 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_006153_130 Hb_006153_130 Hb_000210_140 Hb_000210_140 Hb_006153_130--Hb_000210_140 Hb_001856_160 Hb_001856_160 Hb_006153_130--Hb_001856_160 Hb_002236_010 Hb_002236_010 Hb_006153_130--Hb_002236_010 Hb_007625_030 Hb_007625_030 Hb_006153_130--Hb_007625_030 Hb_000847_050 Hb_000847_050 Hb_006153_130--Hb_000847_050 Hb_009615_100 Hb_009615_100 Hb_006153_130--Hb_009615_100 Hb_000210_140--Hb_001856_160 Hb_003847_050 Hb_003847_050 Hb_000210_140--Hb_003847_050 Hb_003788_010 Hb_003788_010 Hb_000210_140--Hb_003788_010 Hb_007943_020 Hb_007943_020 Hb_000210_140--Hb_007943_020 Hb_029260_010 Hb_029260_010 Hb_000210_140--Hb_029260_010 Hb_001799_090 Hb_001799_090 Hb_001856_160--Hb_001799_090 Hb_003376_300 Hb_003376_300 Hb_001856_160--Hb_003376_300 Hb_002289_110 Hb_002289_110 Hb_001856_160--Hb_002289_110 Hb_005489_120 Hb_005489_120 Hb_001856_160--Hb_005489_120 Hb_000454_200 Hb_000454_200 Hb_001856_160--Hb_000454_200 Hb_002553_070 Hb_002553_070 Hb_002236_010--Hb_002553_070 Hb_000070_070 Hb_000070_070 Hb_002236_010--Hb_000070_070 Hb_005679_120 Hb_005679_120 Hb_002236_010--Hb_005679_120 Hb_023956_010 Hb_023956_010 Hb_002236_010--Hb_023956_010 Hb_000571_060 Hb_000571_060 Hb_002236_010--Hb_000571_060 Hb_002236_010--Hb_007625_030 Hb_007625_030--Hb_002553_070 Hb_007625_030--Hb_023956_010 Hb_009627_020 Hb_009627_020 Hb_007625_030--Hb_009627_020 Hb_004079_100 Hb_004079_100 Hb_007625_030--Hb_004079_100 Hb_007625_030--Hb_000454_200 Hb_000847_050--Hb_000454_200 Hb_000411_050 Hb_000411_050 Hb_000847_050--Hb_000411_050 Hb_002450_180 Hb_002450_180 Hb_000847_050--Hb_002450_180 Hb_006934_020 Hb_006934_020 Hb_000847_050--Hb_006934_020 Hb_006634_090 Hb_006634_090 Hb_000847_050--Hb_006634_090 Hb_000497_100 Hb_000497_100 Hb_000847_050--Hb_000497_100 Hb_009615_100--Hb_000411_050 Hb_009615_100--Hb_007625_030 Hb_009615_100--Hb_000210_140 Hb_003025_150 Hb_003025_150 Hb_009615_100--Hb_003025_150 Hb_009615_100--Hb_000847_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.243945 0.121705 0.376057 0 0.020115
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.297958 0.0839995

CAGE analysis