Hb_006153_160

Information

Type -
Description -
Location Contig6153: 153744-162380
Sequence    

Annotation

kegg
ID pop:POPTR_0001s00390g
description hypothetical protein
nr
ID XP_012087154.1
description PREDICTED: oxysterol-binding protein-related protein 2A isoform X4 [Jatropha curcas]
swissprot
ID Q940Y1
description Oxysterol-binding protein-related protein 2A OS=Arabidopsis thaliana GN=ORP2A PE=2 SV=1
trembl
ID A0A067JP21
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20798 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51201: 154142-158124 , PASA_asmbl_51203: 160583-160802 , PASA_asmbl_51204: 153767-154582 , PASA_asmbl_51205: 154142-162410 , PASA_asmbl_51206: 154142-162410
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006153_160 0.0 - - PREDICTED: oxysterol-binding protein-related protein 2A isoform X4 [Jatropha curcas]
2 Hb_000193_340 0.0741704618 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
3 Hb_002759_220 0.1166928243 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
4 Hb_000328_010 0.1179895211 - - PREDICTED: QWRF motif-containing protein 8-like [Jatropha curcas]
5 Hb_012395_110 0.1332173063 - - PREDICTED: peroxygenase [Jatropha curcas]
6 Hb_001433_150 0.1348337972 - - conserved hypothetical protein [Ricinus communis]
7 Hb_007101_260 0.1392866934 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
8 Hb_000227_280 0.1463391619 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 [Jatropha curcas]
9 Hb_042083_030 0.1464056358 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_001369_010 0.1485086875 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
11 Hb_161396_010 0.1498372685 - - hypothetical protein F383_26394 [Gossypium arboreum]
12 Hb_004007_070 0.1510701475 - - adenylsulfate kinase, putative [Ricinus communis]
13 Hb_000025_160 0.1543607684 - - PREDICTED: F-box protein At2g26850 isoform X1 [Jatropha curcas]
14 Hb_000086_090 0.1545577905 - - PREDICTED: U-box domain-containing protein 3 [Jatropha curcas]
15 Hb_000808_150 0.1552714691 - - PREDICTED: uncharacterized protein LOC105647444 [Jatropha curcas]
16 Hb_000032_510 0.155387428 - - PREDICTED: SUN domain-containing protein 2 [Jatropha curcas]
17 Hb_003226_200 0.1593114721 - - magnesium/proton exchanger, putative [Ricinus communis]
18 Hb_002028_110 0.1627326361 - - PREDICTED: F-box only protein 13 [Jatropha curcas]
19 Hb_032568_010 0.1633116254 - - PREDICTED: protein phosphatase 2C 56-like [Jatropha curcas]
20 Hb_000086_210 0.163865679 - - ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_006153_160 Hb_006153_160 Hb_000193_340 Hb_000193_340 Hb_006153_160--Hb_000193_340 Hb_002759_220 Hb_002759_220 Hb_006153_160--Hb_002759_220 Hb_000328_010 Hb_000328_010 Hb_006153_160--Hb_000328_010 Hb_012395_110 Hb_012395_110 Hb_006153_160--Hb_012395_110 Hb_001433_150 Hb_001433_150 Hb_006153_160--Hb_001433_150 Hb_007101_260 Hb_007101_260 Hb_006153_160--Hb_007101_260 Hb_000193_340--Hb_007101_260 Hb_161396_010 Hb_161396_010 Hb_000193_340--Hb_161396_010 Hb_000193_340--Hb_002759_220 Hb_000808_150 Hb_000808_150 Hb_000193_340--Hb_000808_150 Hb_000193_340--Hb_000328_010 Hb_003226_200 Hb_003226_200 Hb_002759_220--Hb_003226_200 Hb_003226_250 Hb_003226_250 Hb_002759_220--Hb_003226_250 Hb_002759_220--Hb_161396_010 Hb_000805_010 Hb_000805_010 Hb_002759_220--Hb_000805_010 Hb_002498_030 Hb_002498_030 Hb_000328_010--Hb_002498_030 Hb_000086_210 Hb_000086_210 Hb_000328_010--Hb_000086_210 Hb_017439_010 Hb_017439_010 Hb_000328_010--Hb_017439_010 Hb_005144_120 Hb_005144_120 Hb_000328_010--Hb_005144_120 Hb_004007_070 Hb_004007_070 Hb_012395_110--Hb_004007_070 Hb_000086_090 Hb_000086_090 Hb_012395_110--Hb_000086_090 Hb_004241_110 Hb_004241_110 Hb_012395_110--Hb_004241_110 Hb_001102_160 Hb_001102_160 Hb_012395_110--Hb_001102_160 Hb_084147_010 Hb_084147_010 Hb_012395_110--Hb_084147_010 Hb_019516_060 Hb_019516_060 Hb_012395_110--Hb_019516_060 Hb_001180_010 Hb_001180_010 Hb_001433_150--Hb_001180_010 Hb_002028_110 Hb_002028_110 Hb_001433_150--Hb_002028_110 Hb_001153_100 Hb_001153_100 Hb_001433_150--Hb_001153_100 Hb_002641_120 Hb_002641_120 Hb_001433_150--Hb_002641_120 Hb_001544_050 Hb_001544_050 Hb_001433_150--Hb_001544_050 Hb_001433_150--Hb_002759_220 Hb_003050_360 Hb_003050_360 Hb_007101_260--Hb_003050_360 Hb_000327_360 Hb_000327_360 Hb_007101_260--Hb_000327_360 Hb_007101_260--Hb_161396_010 Hb_000283_140 Hb_000283_140 Hb_007101_260--Hb_000283_140 Hb_006120_060 Hb_006120_060 Hb_007101_260--Hb_006120_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.553282 4.33302 10.3021 17.1874 0.153249 0.117035
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.78928 1.48343 3.93761 1.88582 11.1387

CAGE analysis