Hb_006153_180

Information

Type -
Description -
Location Contig6153: 179022-182844
Sequence    

Annotation

kegg
ID rcu:RCOM_0250440
description oligopeptide transporter, putative
nr
ID XP_012087157.1
description PREDICTED: protein NRT1/ PTR FAMILY 6.3 isoform X1 [Jatropha curcas]
swissprot
ID Q05085
description Protein NRT1/ PTR FAMILY 6.3 OS=Arabidopsis thaliana GN=NPF6.3 PE=1 SV=1
trembl
ID A0A067JS35
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20799 PE=3 SV=1
Gene Ontology
ID GO:0016020
description protein nrt1 ptr family -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006153_180 0.0 - - PREDICTED: protein NRT1/ PTR FAMILY 6.3 isoform X1 [Jatropha curcas]
2 Hb_003878_220 0.1627212956 - - vacuolar protein sorting, putative [Ricinus communis]
3 Hb_008790_040 0.1750844853 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8 [Jatropha curcas]
4 Hb_000975_200 0.2056859456 - - PREDICTED: uncharacterized protein LOC105628231 isoform X2 [Jatropha curcas]
5 Hb_011861_090 0.220505532 - - PREDICTED: probable sodium-coupled neutral amino acid transporter 6 [Jatropha curcas]
6 Hb_000069_150 0.2215658718 - - PREDICTED: uncharacterized protein At4g00950 [Jatropha curcas]
7 Hb_002909_110 0.2240503117 - - PREDICTED: uncharacterized protein LOC105648153 [Jatropha curcas]
8 Hb_005784_060 0.2261338348 - - PREDICTED: U-box domain-containing protein 28 [Jatropha curcas]
9 Hb_001269_580 0.2312105515 - - PREDICTED: shikimate O-hydroxycinnamoyltransferase [Jatropha curcas]
10 Hb_007138_030 0.2316396535 - - PREDICTED: putative disease resistance protein At4g11170 [Jatropha curcas]
11 Hb_130885_010 0.231959544 - - PREDICTED: beta-glucosidase 13-like [Jatropha curcas]
12 Hb_001898_140 0.2356470935 - - hypothetical protein AMTR_s00071p00184460 [Amborella trichopoda]
13 Hb_000442_120 0.2368321879 - - conserved hypothetical protein [Ricinus communis]
14 Hb_012707_010 0.2384402427 - - PREDICTED: uncharacterized protein C594.04c [Jatropha curcas]
15 Hb_004162_060 0.2394350267 - - unnamed protein product [Vitis vinifera]
16 Hb_001486_350 0.2394634927 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
17 Hb_001310_050 0.2419522087 - - PREDICTED: formin-like protein 6 [Jatropha curcas]
18 Hb_000394_050 0.2427358804 - - -
19 Hb_000236_180 0.2442412447 - - serine hydroxymethyltransferase, putative [Ricinus communis]
20 Hb_000300_420 0.2463650584 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_006153_180 Hb_006153_180 Hb_003878_220 Hb_003878_220 Hb_006153_180--Hb_003878_220 Hb_008790_040 Hb_008790_040 Hb_006153_180--Hb_008790_040 Hb_000975_200 Hb_000975_200 Hb_006153_180--Hb_000975_200 Hb_011861_090 Hb_011861_090 Hb_006153_180--Hb_011861_090 Hb_000069_150 Hb_000069_150 Hb_006153_180--Hb_000069_150 Hb_002909_110 Hb_002909_110 Hb_006153_180--Hb_002909_110 Hb_005976_010 Hb_005976_010 Hb_003878_220--Hb_005976_010 Hb_003878_220--Hb_011861_090 Hb_003878_220--Hb_008790_040 Hb_000077_360 Hb_000077_360 Hb_003878_220--Hb_000077_360 Hb_000115_250 Hb_000115_250 Hb_003878_220--Hb_000115_250 Hb_158092_040 Hb_158092_040 Hb_008790_040--Hb_158092_040 Hb_001310_050 Hb_001310_050 Hb_008790_040--Hb_001310_050 Hb_008066_080 Hb_008066_080 Hb_008790_040--Hb_008066_080 Hb_006889_030 Hb_006889_030 Hb_008790_040--Hb_006889_030 Hb_002301_110 Hb_002301_110 Hb_008790_040--Hb_002301_110 Hb_005784_060 Hb_005784_060 Hb_000975_200--Hb_005784_060 Hb_001898_140 Hb_001898_140 Hb_000975_200--Hb_001898_140 Hb_061222_010 Hb_061222_010 Hb_000975_200--Hb_061222_010 Hb_000003_110 Hb_000003_110 Hb_000975_200--Hb_000003_110 Hb_000975_200--Hb_000069_150 Hb_010883_180 Hb_010883_180 Hb_000975_200--Hb_010883_180 Hb_166635_010 Hb_166635_010 Hb_011861_090--Hb_166635_010 Hb_000302_320 Hb_000302_320 Hb_011861_090--Hb_000302_320 Hb_000544_190 Hb_000544_190 Hb_011861_090--Hb_000544_190 Hb_011861_090--Hb_010883_180 Hb_000389_040 Hb_000389_040 Hb_011861_090--Hb_000389_040 Hb_023308_010 Hb_023308_010 Hb_011861_090--Hb_023308_010 Hb_002869_090 Hb_002869_090 Hb_000069_150--Hb_002869_090 Hb_000659_050 Hb_000659_050 Hb_000069_150--Hb_000659_050 Hb_000327_100 Hb_000327_100 Hb_000069_150--Hb_000327_100 Hb_001675_020 Hb_001675_020 Hb_000069_150--Hb_001675_020 Hb_000561_040 Hb_000561_040 Hb_000069_150--Hb_000561_040 Hb_002616_020 Hb_002616_020 Hb_000069_150--Hb_002616_020 Hb_002110_290 Hb_002110_290 Hb_002909_110--Hb_002110_290 Hb_000442_120 Hb_000442_120 Hb_002909_110--Hb_000442_120 Hb_012707_010 Hb_012707_010 Hb_002909_110--Hb_012707_010 Hb_000300_420 Hb_000300_420 Hb_002909_110--Hb_000300_420 Hb_000950_030 Hb_000950_030 Hb_002909_110--Hb_000950_030 Hb_003397_020 Hb_003397_020 Hb_002909_110--Hb_003397_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0343762 0.1649 0.147034 1.78955 0.0107289 0.0212387
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0205094 0.464956 0.588271 0.517994

CAGE analysis