Hb_006153_200

Information

Type -
Description -
Location Contig6153: 203944-204615
Sequence    

Annotation

kegg
ID tcc:TCM_016002
description Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
nr
ID XP_007039885.1
description Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Theobroma cacao]
swissprot
ID Q00451
description 36.4 kDa proline-rich protein OS=Solanum lycopersicum GN=TPRP-F1 PE=2 SV=1
trembl
ID A0A061G475
description Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein OS=Theobroma cacao GN=TCM_016002 PE=4 SV=1
Gene Ontology
ID GO:0008289
description kda proline-rich protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006153_200 0.0 - - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Theobroma cacao]
2 Hb_001195_440 0.0706260155 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
3 Hb_001901_010 0.0757390202 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
4 Hb_002999_090 0.0893102484 - - conserved hypothetical protein [Ricinus communis]
5 Hb_045992_010 0.0963101517 - - -
6 Hb_001218_020 0.099336798 transcription factor TF Family: MYB hypothetical protein POPTR_0005s17080g [Populus trichocarpa]
7 Hb_003462_150 0.1075108891 - - PREDICTED: chitinase 1-like [Eucalyptus grandis]
8 Hb_004544_080 0.1079585154 - - lectin protein kinase [Populus trichocarpa]
9 Hb_001971_070 0.1141979118 - - unnamed protein product [Coffea canephora]
10 Hb_164162_020 0.115787166 - - PREDICTED: uncharacterized protein LOC105646964 [Jatropha curcas]
11 Hb_000141_230 0.1202170674 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Camelina sativa]
12 Hb_002556_020 0.1277196222 - - hypothetical protein JCGZ_12588 [Jatropha curcas]
13 Hb_006538_070 0.1277700901 - - hypothetical protein JCGZ_18339 [Jatropha curcas]
14 Hb_002475_020 0.1318912727 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X1 [Populus euphratica]
15 Hb_000948_070 0.1324883628 - - hypothetical protein POPTR_0016s01720g [Populus trichocarpa]
16 Hb_000005_270 0.1328367454 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
17 Hb_031340_030 0.1381393318 - - PREDICTED: L-type lectin-domain containing receptor kinase IV.1 [Jatropha curcas]
18 Hb_000608_080 0.1400969251 - - hypothetical protein JCGZ_22216 [Jatropha curcas]
19 Hb_000301_030 0.1466537279 - - PREDICTED: pectate lyase-like [Jatropha curcas]
20 Hb_106204_010 0.1470827718 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_006153_200 Hb_006153_200 Hb_001195_440 Hb_001195_440 Hb_006153_200--Hb_001195_440 Hb_001901_010 Hb_001901_010 Hb_006153_200--Hb_001901_010 Hb_002999_090 Hb_002999_090 Hb_006153_200--Hb_002999_090 Hb_045992_010 Hb_045992_010 Hb_006153_200--Hb_045992_010 Hb_001218_020 Hb_001218_020 Hb_006153_200--Hb_001218_020 Hb_003462_150 Hb_003462_150 Hb_006153_200--Hb_003462_150 Hb_001195_440--Hb_001901_010 Hb_164162_020 Hb_164162_020 Hb_001195_440--Hb_164162_020 Hb_001971_070 Hb_001971_070 Hb_001195_440--Hb_001971_070 Hb_004544_080 Hb_004544_080 Hb_001195_440--Hb_004544_080 Hb_006538_070 Hb_006538_070 Hb_001195_440--Hb_006538_070 Hb_001901_010--Hb_002999_090 Hb_001901_010--Hb_164162_020 Hb_001901_010--Hb_001971_070 Hb_001901_010--Hb_003462_150 Hb_001901_010--Hb_004544_080 Hb_002999_090--Hb_003462_150 Hb_002556_020 Hb_002556_020 Hb_002999_090--Hb_002556_020 Hb_002999_090--Hb_004544_080 Hb_000141_230 Hb_000141_230 Hb_002999_090--Hb_000141_230 Hb_002475_020 Hb_002475_020 Hb_002999_090--Hb_002475_020 Hb_045992_010--Hb_001901_010 Hb_000005_270 Hb_000005_270 Hb_045992_010--Hb_000005_270 Hb_045992_010--Hb_001218_020 Hb_000120_440 Hb_000120_440 Hb_045992_010--Hb_000120_440 Hb_045992_010--Hb_002999_090 Hb_000120_710 Hb_000120_710 Hb_001218_020--Hb_000120_710 Hb_003855_070 Hb_003855_070 Hb_001218_020--Hb_003855_070 Hb_001328_110 Hb_001328_110 Hb_001218_020--Hb_001328_110 Hb_006538_050 Hb_006538_050 Hb_001218_020--Hb_006538_050 Hb_000003_470 Hb_000003_470 Hb_001218_020--Hb_000003_470 Hb_003462_150--Hb_004544_080 Hb_003462_150--Hb_000141_230 Hb_000608_080 Hb_000608_080 Hb_003462_150--Hb_000608_080 Hb_003462_150--Hb_002556_020 Hb_003462_150--Hb_002475_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.375975 0 0.524336 0.0347814 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.93745 0

CAGE analysis