Hb_006156_020

Information

Type -
Description -
Location Contig6156: 32168-33138
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006156_020 0.0 - - -
2 Hb_005800_040 0.2268408785 - - -
3 Hb_001251_030 0.2326881469 - - hypothetical protein PHAVU_002G189800g [Phaseolus vulgaris]
4 Hb_013394_010 0.2424778629 - - PREDICTED: laccase-14-like [Malus domestica]
5 Hb_011344_080 0.2472473319 - - -
6 Hb_008071_030 0.2627095867 - - -
7 Hb_004466_010 0.2967862157 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
8 Hb_103452_020 0.3177940807 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
9 Hb_052761_010 0.3222060704 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
10 Hb_000395_100 0.3377315823 - - Protein MYG1, putative [Ricinus communis]
11 Hb_000739_090 0.3443928241 - - -
12 Hb_013124_010 0.3567282477 - - PREDICTED: (+)-neomenthol dehydrogenase-like isoform X1 [Jatropha curcas]
13 Hb_001948_010 0.357038745 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
14 Hb_185326_010 0.3586910591 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000594_170 0.3626972265 - - -
16 Hb_000905_070 0.3728318982 - - PREDICTED: uncharacterized protein LOC104223093 [Nicotiana sylvestris]
17 Hb_087008_010 0.3733935611 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
18 Hb_000953_150 0.3734240334 - - -
19 Hb_000098_280 0.3737839918 - - PREDICTED: pentatricopeptide repeat-containing protein At1g33350 [Jatropha curcas]
20 Hb_080765_020 0.3748898713 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]

Gene co-expression network

sample Hb_006156_020 Hb_006156_020 Hb_005800_040 Hb_005800_040 Hb_006156_020--Hb_005800_040 Hb_001251_030 Hb_001251_030 Hb_006156_020--Hb_001251_030 Hb_013394_010 Hb_013394_010 Hb_006156_020--Hb_013394_010 Hb_011344_080 Hb_011344_080 Hb_006156_020--Hb_011344_080 Hb_008071_030 Hb_008071_030 Hb_006156_020--Hb_008071_030 Hb_004466_010 Hb_004466_010 Hb_006156_020--Hb_004466_010 Hb_005800_040--Hb_001251_030 Hb_005800_040--Hb_013394_010 Hb_005800_040--Hb_011344_080 Hb_052761_010 Hb_052761_010 Hb_005800_040--Hb_052761_010 Hb_000739_090 Hb_000739_090 Hb_005800_040--Hb_000739_090 Hb_001251_030--Hb_013394_010 Hb_001251_030--Hb_011344_080 Hb_001251_030--Hb_052761_010 Hb_001251_030--Hb_000739_090 Hb_013394_010--Hb_011344_080 Hb_108854_010 Hb_108854_010 Hb_013394_010--Hb_108854_010 Hb_013394_010--Hb_008071_030 Hb_000594_170 Hb_000594_170 Hb_013394_010--Hb_000594_170 Hb_011344_080--Hb_108854_010 Hb_011344_080--Hb_000594_170 Hb_011344_080--Hb_008071_030 Hb_008071_030--Hb_004466_010 Hb_008071_030--Hb_005800_040 Hb_008071_030--Hb_001251_030 Hb_001948_010 Hb_001948_010 Hb_008071_030--Hb_001948_010 Hb_000395_100 Hb_000395_100 Hb_004466_010--Hb_000395_100 Hb_095413_040 Hb_095413_040 Hb_004466_010--Hb_095413_040 Hb_017836_010 Hb_017836_010 Hb_004466_010--Hb_017836_010 Hb_000926_220 Hb_000926_220 Hb_004466_010--Hb_000926_220 Hb_049438_010 Hb_049438_010 Hb_004466_010--Hb_049438_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.494854 0 0.0923217 0 0.30178 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.175932 0

CAGE analysis