Hb_006157_020

Information

Type -
Description -
Location Contig6157: 14390-26278
Sequence    

Annotation

kegg
ID rcu:RCOM_0599700
description nucleic acid binding protein, putative
nr
ID XP_012065807.1
description PREDICTED: nucleolin 1-like isoform X2 [Jatropha curcas]
swissprot
ID Q7XTT4
description Nucleolin 2 OS=Oryza sativa subsp. japonica GN=Os04g0620700 PE=2 SV=2
trembl
ID A0A067LGM1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24230 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51215: 17363-18167 , PASA_asmbl_51216: 14589-19965 , PASA_asmbl_51217: 19984-22580
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006157_020 0.0 - - PREDICTED: nucleolin 1-like isoform X2 [Jatropha curcas]
2 Hb_000271_090 0.0600866398 - - WD-repeat protein, putative [Ricinus communis]
3 Hb_004429_100 0.065279561 - - PREDICTED: asparagine synthetase domain-containing protein 1 [Jatropha curcas]
4 Hb_033834_060 0.0824292665 - - DNA-binding bromodomain-containing family protein [Populus trichocarpa]
5 Hb_004689_050 0.0834656345 - - conserved hypothetical protein [Ricinus communis]
6 Hb_031284_040 0.0835639241 - - PREDICTED: pentatricopeptide repeat-containing protein At4g30700 [Jatropha curcas]
7 Hb_012799_130 0.0852828525 - - PREDICTED: flap endonuclease GEN-like 2 [Jatropha curcas]
8 Hb_004954_070 0.0884996848 - - PREDICTED: uncharacterized protein LOC105645187 [Jatropha curcas]
9 Hb_000083_160 0.0909961768 - - Cell division cycle protein, putative [Ricinus communis]
10 Hb_004410_030 0.0942370287 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_001289_080 0.0949573258 - - PREDICTED: protein YLS9-like [Jatropha curcas]
12 Hb_000123_210 0.0954653161 - - PREDICTED: uncharacterized protein LOC105641576 isoform X2 [Jatropha curcas]
13 Hb_005608_020 0.0956762388 - - PREDICTED: nucleolar complex protein 2 homolog isoform X1 [Jatropha curcas]
14 Hb_001638_170 0.0958945973 - - hypothetical protein Csa_3G118170 [Cucumis sativus]
15 Hb_164544_010 0.0966956338 - - PREDICTED: protein arginine N-methyltransferase 1.5 isoform X2 [Jatropha curcas]
16 Hb_004370_030 0.0972165038 - - PREDICTED: RNA-binding protein 34 [Jatropha curcas]
17 Hb_001489_150 0.0993845862 - - PREDICTED: uncharacterized protein LOC105123623 isoform X2 [Populus euphratica]
18 Hb_006252_040 0.0997766401 - - queuine tRNA-ribosyltransferase, putative [Ricinus communis]
19 Hb_023386_040 0.1002669155 - - PREDICTED: chaperone protein dnaJ 13-like [Populus euphratica]
20 Hb_007575_050 0.1005177191 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE6 [Jatropha curcas]

Gene co-expression network

sample Hb_006157_020 Hb_006157_020 Hb_000271_090 Hb_000271_090 Hb_006157_020--Hb_000271_090 Hb_004429_100 Hb_004429_100 Hb_006157_020--Hb_004429_100 Hb_033834_060 Hb_033834_060 Hb_006157_020--Hb_033834_060 Hb_004689_050 Hb_004689_050 Hb_006157_020--Hb_004689_050 Hb_031284_040 Hb_031284_040 Hb_006157_020--Hb_031284_040 Hb_012799_130 Hb_012799_130 Hb_006157_020--Hb_012799_130 Hb_000271_090--Hb_004429_100 Hb_000271_090--Hb_031284_040 Hb_000084_120 Hb_000084_120 Hb_000271_090--Hb_000084_120 Hb_000083_160 Hb_000083_160 Hb_000271_090--Hb_000083_160 Hb_000271_090--Hb_033834_060 Hb_004429_100--Hb_004689_050 Hb_004429_100--Hb_033834_060 Hb_001172_010 Hb_001172_010 Hb_004429_100--Hb_001172_010 Hb_000123_210 Hb_000123_210 Hb_004429_100--Hb_000123_210 Hb_020719_030 Hb_020719_030 Hb_033834_060--Hb_020719_030 Hb_033834_060--Hb_004689_050 Hb_009627_010 Hb_009627_010 Hb_033834_060--Hb_009627_010 Hb_033834_060--Hb_001172_010 Hb_001488_410 Hb_001488_410 Hb_033834_060--Hb_001488_410 Hb_001946_010 Hb_001946_010 Hb_004689_050--Hb_001946_010 Hb_000638_120 Hb_000638_120 Hb_004689_050--Hb_000638_120 Hb_000205_100 Hb_000205_100 Hb_004689_050--Hb_000205_100 Hb_100215_010 Hb_100215_010 Hb_004689_050--Hb_100215_010 Hb_031284_040--Hb_000083_160 Hb_000173_490 Hb_000173_490 Hb_031284_040--Hb_000173_490 Hb_007575_050 Hb_007575_050 Hb_031284_040--Hb_007575_050 Hb_004935_030 Hb_004935_030 Hb_031284_040--Hb_004935_030 Hb_008159_020 Hb_008159_020 Hb_031284_040--Hb_008159_020 Hb_010691_060 Hb_010691_060 Hb_012799_130--Hb_010691_060 Hb_002272_180 Hb_002272_180 Hb_012799_130--Hb_002272_180 Hb_185830_020 Hb_185830_020 Hb_012799_130--Hb_185830_020 Hb_012490_030 Hb_012490_030 Hb_012799_130--Hb_012490_030 Hb_004881_020 Hb_004881_020 Hb_012799_130--Hb_004881_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.7803 10.4006 9.31028 9.67665 14.8705 29.627
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.5025 15.1819 11.0276 23.3801 8.14715

CAGE analysis