Hb_006157_050

Information

Type -
Description -
Location Contig6157: 50305-54925
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007032400.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID A0A061EEG7
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_018243 PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006157_050 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_065943_010 0.0118501379 - - -
3 Hb_099723_010 0.0313633161 - - hypothetical protein JCGZ_15340 [Jatropha curcas]
4 Hb_000940_190 0.0364051127 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
5 Hb_032531_010 0.0956830686 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_050334_010 0.1163137057 - - -
7 Hb_002869_070 0.1311270824 - - -
8 Hb_106815_010 0.1722357632 - - hypothetical protein, conserved [Eimeria acervulina]
9 Hb_004212_040 0.1838004211 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
10 Hb_002473_140 0.1867952146 - - -
11 Hb_001519_210 0.2029117912 - - hypothetical protein B456_003G032500 [Gossypium raimondii]
12 Hb_004124_010 0.212330867 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
13 Hb_000205_340 0.2140556092 - - PREDICTED: putative B3 domain-containing protein At2g27410 [Jatropha curcas]
14 Hb_004078_030 0.2141775663 - - Putative polyprotein, identical [Solanum demissum]
15 Hb_004019_060 0.2141775671 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
16 Hb_008601_020 0.2141775676 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_004989_010 0.214177579 - - retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa Japonica Group]
18 Hb_017184_010 0.2141785032 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
19 Hb_001952_080 0.2141788321 - - PREDICTED: uncharacterized protein LOC105042236 isoform X2 [Elaeis guineensis]
20 Hb_039316_010 0.2141790128 - - PREDICTED: uncharacterized protein LOC105771917 [Gossypium raimondii]

Gene co-expression network

sample Hb_006157_050 Hb_006157_050 Hb_065943_010 Hb_065943_010 Hb_006157_050--Hb_065943_010 Hb_099723_010 Hb_099723_010 Hb_006157_050--Hb_099723_010 Hb_000940_190 Hb_000940_190 Hb_006157_050--Hb_000940_190 Hb_032531_010 Hb_032531_010 Hb_006157_050--Hb_032531_010 Hb_050334_010 Hb_050334_010 Hb_006157_050--Hb_050334_010 Hb_002869_070 Hb_002869_070 Hb_006157_050--Hb_002869_070 Hb_065943_010--Hb_099723_010 Hb_065943_010--Hb_000940_190 Hb_065943_010--Hb_032531_010 Hb_065943_010--Hb_050334_010 Hb_065943_010--Hb_002869_070 Hb_099723_010--Hb_000940_190 Hb_099723_010--Hb_032531_010 Hb_099723_010--Hb_050334_010 Hb_099723_010--Hb_002869_070 Hb_000940_190--Hb_032531_010 Hb_000940_190--Hb_050334_010 Hb_000940_190--Hb_002869_070 Hb_032531_010--Hb_050334_010 Hb_012295_020 Hb_012295_020 Hb_032531_010--Hb_012295_020 Hb_001519_210 Hb_001519_210 Hb_050334_010--Hb_001519_210 Hb_050334_010--Hb_002869_070 Hb_006933_010 Hb_006933_010 Hb_002869_070--Hb_006933_010 Hb_154997_010 Hb_154997_010 Hb_002869_070--Hb_154997_010 Hb_004124_010 Hb_004124_010 Hb_002869_070--Hb_004124_010 Hb_002473_140 Hb_002473_140 Hb_002869_070--Hb_002473_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0316649 0.00652663 0.0353323

CAGE analysis