Hb_006162_010

Information

Type -
Description -
Location Contig6162: 1284-9010
Sequence    

Annotation

kegg
ID -
description -
nr
ID AIA86586.1
description CAZy families GH95 protein, partial [uncultured Chitinophaga sp.]
swissprot
ID -
description -
trembl
ID A0A060C1G0
description CAZy families GH95 protein (Fragment) OS=uncultured Chitinophaga sp. PE=4 SV=1
Gene Ontology
ID GO:0047513
description alpha-l-fucosidase 2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51234: 1288-37128
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006162_010 0.0 - - CAZy families GH95 protein, partial [uncultured Chitinophaga sp.]
2 Hb_024128_020 0.0841254682 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
3 Hb_000300_290 0.0852345482 - - PREDICTED: uncharacterized protein LOC105632583 [Jatropha curcas]
4 Hb_001390_130 0.0921797836 - - hypothetical protein POPTR_0009s08590g [Populus trichocarpa]
5 Hb_164010_030 0.0983870524 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
6 Hb_007416_060 0.1013964069 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 18 [Jatropha curcas]
7 Hb_004079_030 0.1038007089 - - PREDICTED: uncharacterized protein LOC105637701 isoform X2 [Jatropha curcas]
8 Hb_019654_030 0.1041641244 - - maoC-like dehydratase domain-containing family protein [Populus trichocarpa]
9 Hb_009193_030 0.1041901604 - - hypothetical protein POPTR_0010s16620g [Populus trichocarpa]
10 Hb_008176_010 0.1042713079 - - PREDICTED: pentatricopeptide repeat-containing protein At4g20090 [Jatropha curcas]
11 Hb_007416_090 0.1058393083 - - UDP-sugar transporter, putative [Ricinus communis]
12 Hb_002284_230 0.1066010369 - - PREDICTED: uncharacterized protein At5g43822 [Jatropha curcas]
13 Hb_007460_020 0.1094440746 - - PREDICTED: guanosine nucleotide diphosphate dissociation inhibitor 1 [Jatropha curcas]
14 Hb_119600_070 0.1095897535 - - PREDICTED: uncharacterized protein LOC105635190 [Jatropha curcas]
15 Hb_003994_150 0.1105171991 - - PREDICTED: pyrophosphate-energized membrane proton pump 2 [Jatropha curcas]
16 Hb_000260_010 0.1108278816 - - PREDICTED: phospholipid-transporting ATPase 1-like [Jatropha curcas]
17 Hb_005490_030 0.1127104953 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X3 [Jatropha curcas]
18 Hb_005488_200 0.1133067199 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
19 Hb_001352_020 0.1136468954 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like [Jatropha curcas]
20 Hb_003376_250 0.1137616917 - - Transducin/WD40 repeat-like superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_006162_010 Hb_006162_010 Hb_024128_020 Hb_024128_020 Hb_006162_010--Hb_024128_020 Hb_000300_290 Hb_000300_290 Hb_006162_010--Hb_000300_290 Hb_001390_130 Hb_001390_130 Hb_006162_010--Hb_001390_130 Hb_164010_030 Hb_164010_030 Hb_006162_010--Hb_164010_030 Hb_007416_060 Hb_007416_060 Hb_006162_010--Hb_007416_060 Hb_004079_030 Hb_004079_030 Hb_006162_010--Hb_004079_030 Hb_001004_070 Hb_001004_070 Hb_024128_020--Hb_001004_070 Hb_005144_050 Hb_005144_050 Hb_024128_020--Hb_005144_050 Hb_029879_070 Hb_029879_070 Hb_024128_020--Hb_029879_070 Hb_001366_180 Hb_001366_180 Hb_024128_020--Hb_001366_180 Hb_006478_020 Hb_006478_020 Hb_024128_020--Hb_006478_020 Hb_029510_050 Hb_029510_050 Hb_024128_020--Hb_029510_050 Hb_002111_040 Hb_002111_040 Hb_000300_290--Hb_002111_040 Hb_002842_020 Hb_002842_020 Hb_000300_290--Hb_002842_020 Hb_000053_100 Hb_000053_100 Hb_000300_290--Hb_000053_100 Hb_000023_090 Hb_000023_090 Hb_000300_290--Hb_000023_090 Hb_001006_020 Hb_001006_020 Hb_000300_290--Hb_001006_020 Hb_000291_080 Hb_000291_080 Hb_001390_130--Hb_000291_080 Hb_001390_130--Hb_002111_040 Hb_003697_040 Hb_003697_040 Hb_001390_130--Hb_003697_040 Hb_005488_200 Hb_005488_200 Hb_001390_130--Hb_005488_200 Hb_001390_130--Hb_007416_060 Hb_000538_070 Hb_000538_070 Hb_001390_130--Hb_000538_070 Hb_000497_300 Hb_000497_300 Hb_164010_030--Hb_000497_300 Hb_000116_260 Hb_000116_260 Hb_164010_030--Hb_000116_260 Hb_001377_490 Hb_001377_490 Hb_164010_030--Hb_001377_490 Hb_001163_100 Hb_001163_100 Hb_164010_030--Hb_001163_100 Hb_000260_010 Hb_000260_010 Hb_164010_030--Hb_000260_010 Hb_001014_030 Hb_001014_030 Hb_164010_030--Hb_001014_030 Hb_007416_060--Hb_005488_200 Hb_007416_060--Hb_000116_260 Hb_000783_020 Hb_000783_020 Hb_007416_060--Hb_000783_020 Hb_001489_080 Hb_001489_080 Hb_007416_060--Hb_001489_080 Hb_003376_250 Hb_003376_250 Hb_007416_060--Hb_003376_250 Hb_000436_130 Hb_000436_130 Hb_007416_060--Hb_000436_130 Hb_000138_110 Hb_000138_110 Hb_004079_030--Hb_000138_110 Hb_002027_040 Hb_002027_040 Hb_004079_030--Hb_002027_040 Hb_001811_030 Hb_001811_030 Hb_004079_030--Hb_001811_030 Hb_000059_050 Hb_000059_050 Hb_004079_030--Hb_000059_050 Hb_002005_020 Hb_002005_020 Hb_004079_030--Hb_002005_020 Hb_119600_070 Hb_119600_070 Hb_004079_030--Hb_119600_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.53599 3.63777 4.15793 12.1498 6.10068 9.08159
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.5349 7.83002 18.2636 10.254 10.8053

CAGE analysis