Hb_006173_020

Information

Type -
Description -
Location Contig6173: 18011-27771
Sequence    

Annotation

kegg
ID rcu:RCOM_0720070
description hypothetical protein
nr
ID XP_012089956.1
description PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
swissprot
ID P40513
description Mitochondrial acidic protein MAM33 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MAM33 PE=1 SV=1
trembl
ID A0A067JSX1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02865 PE=4 SV=1
Gene Ontology
ID GO:0005759
description mitochondrial acidic protein mam33

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51310: 19383-27578
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006173_020 0.0 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
2 Hb_001016_060 0.0603150545 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005016_030 0.0758710223 - - hypothetical protein JCGZ_16549 [Jatropha curcas]
4 Hb_009615_110 0.0836069897 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
5 Hb_019871_020 0.0851755507 - - PREDICTED: uncharacterized protein LOC105642047 [Jatropha curcas]
6 Hb_000320_440 0.0852508526 - - PREDICTED: tRNA wybutosine-synthesizing protein 2/3/4 isoform X1 [Jatropha curcas]
7 Hb_000270_450 0.0892903873 - - PREDICTED: uncharacterized protein LOC105167687 [Sesamum indicum]
8 Hb_002149_040 0.0897069766 - - conserved hypothetical protein [Ricinus communis]
9 Hb_113216_010 0.0914595635 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
10 Hb_000172_530 0.0938902554 - - PREDICTED: UBP1-associated protein 2B-like isoform X1 [Jatropha curcas]
11 Hb_000088_180 0.0963865507 - - hypothetical protein JCGZ_11198 [Jatropha curcas]
12 Hb_001009_050 0.1025162837 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
13 Hb_000185_090 0.1026418952 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
14 Hb_006478_070 0.1033821261 - - PREDICTED: uncharacterized protein LOC105649957 [Jatropha curcas]
15 Hb_000322_170 0.1040434224 - - PREDICTED: nucleosome assembly protein 1;3 [Jatropha curcas]
16 Hb_025048_040 0.1053407947 - - PREDICTED: NAP1-related protein 2 [Jatropha curcas]
17 Hb_002235_360 0.1056096976 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39680 [Jatropha curcas]
18 Hb_000212_280 0.1071821276 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Gossypium raimondii]
19 Hb_001178_060 0.1074405821 - - PREDICTED: protein BUD31 homolog 2 isoform X1 [Jatropha curcas]
20 Hb_002405_020 0.1075454563 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_006173_020 Hb_006173_020 Hb_001016_060 Hb_001016_060 Hb_006173_020--Hb_001016_060 Hb_005016_030 Hb_005016_030 Hb_006173_020--Hb_005016_030 Hb_009615_110 Hb_009615_110 Hb_006173_020--Hb_009615_110 Hb_019871_020 Hb_019871_020 Hb_006173_020--Hb_019871_020 Hb_000320_440 Hb_000320_440 Hb_006173_020--Hb_000320_440 Hb_000270_450 Hb_000270_450 Hb_006173_020--Hb_000270_450 Hb_002149_040 Hb_002149_040 Hb_001016_060--Hb_002149_040 Hb_003605_070 Hb_003605_070 Hb_001016_060--Hb_003605_070 Hb_000692_260 Hb_000692_260 Hb_001016_060--Hb_000692_260 Hb_001016_060--Hb_005016_030 Hb_000363_340 Hb_000363_340 Hb_001016_060--Hb_000363_340 Hb_001178_060 Hb_001178_060 Hb_005016_030--Hb_001178_060 Hb_000322_170 Hb_000322_170 Hb_005016_030--Hb_000322_170 Hb_005016_030--Hb_002149_040 Hb_005016_030--Hb_000320_440 Hb_000318_140 Hb_000318_140 Hb_009615_110--Hb_000318_140 Hb_009615_110--Hb_000320_440 Hb_002955_010 Hb_002955_010 Hb_009615_110--Hb_002955_010 Hb_001009_050 Hb_001009_050 Hb_009615_110--Hb_001009_050 Hb_009615_110--Hb_000270_450 Hb_000608_340 Hb_000608_340 Hb_019871_020--Hb_000608_340 Hb_001582_030 Hb_001582_030 Hb_019871_020--Hb_001582_030 Hb_004531_090 Hb_004531_090 Hb_019871_020--Hb_004531_090 Hb_000185_090 Hb_000185_090 Hb_019871_020--Hb_000185_090 Hb_000940_040 Hb_000940_040 Hb_019871_020--Hb_000940_040 Hb_001776_080 Hb_001776_080 Hb_000320_440--Hb_001776_080 Hb_000088_180 Hb_000088_180 Hb_000320_440--Hb_000088_180 Hb_000172_530 Hb_000172_530 Hb_000320_440--Hb_000172_530 Hb_000260_700 Hb_000260_700 Hb_000320_440--Hb_000260_700 Hb_003777_220 Hb_003777_220 Hb_000320_440--Hb_003777_220 Hb_000270_450--Hb_001009_050 Hb_001140_080 Hb_001140_080 Hb_000270_450--Hb_001140_080 Hb_025048_040 Hb_025048_040 Hb_000270_450--Hb_025048_040 Hb_000270_450--Hb_005016_030 Hb_000270_450--Hb_000320_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
136.66 40.7419 8.75052 6.87104 158.813 175.197
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
53.1592 57.3155 32.2003 22.913 8.89321

CAGE analysis