Hb_006185_020

Information

Type -
Description -
Location Contig6185: 5757-54373
Sequence    

Annotation

kegg
ID pop:POPTR_0017s06640g
description midasin-related family protein
nr
ID XP_012068918.1
description PREDICTED: midasin [Jatropha curcas]
swissprot
ID Q869L3
description Midasin OS=Dictyostelium discoideum GN=mdn1 PE=3 SV=2
trembl
ID A0A067KX91
description Midasin OS=Jatropha curcas GN=JCGZ_24731 PE=3 SV=1
Gene Ontology
ID GO:0005634
description midasin isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51323: 6319-6832 , PASA_asmbl_51324: 9654-11874 , PASA_asmbl_51326: 12409-12689 , PASA_asmbl_51329: 13334-13999 , PASA_asmbl_51331: 14473-15097 , PASA_asmbl_51332: 15628-16001 , PASA_asmbl_51334: 16379-20658 , PASA_asmbl_51335: 23560-26533 , PASA_asmbl_51336: 40766-42589 , PASA_asmbl_51337: 47638-50026
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006185_020 0.0 - - PREDICTED: midasin [Jatropha curcas]
2 Hb_000032_310 0.0900645093 - - ring finger protein, putative [Ricinus communis]
3 Hb_000181_180 0.0995769685 - - PREDICTED: uncharacterized protein LOC105637608 [Jatropha curcas]
4 Hb_003206_030 0.1089025583 - - PREDICTED: uncharacterized protein LOC105632652 [Jatropha curcas]
5 Hb_144824_010 0.1109800048 - - hypothetical protein POPTR_0019s02110g [Populus trichocarpa]
6 Hb_000236_080 0.1118098493 - - PREDICTED: small subunit processome component 20 homolog [Jatropha curcas]
7 Hb_000808_070 0.1226037 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
8 Hb_001301_230 0.1232977146 - - PREDICTED: uncharacterized protein LOC105632949 isoform X2 [Jatropha curcas]
9 Hb_000832_320 0.1236725545 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
10 Hb_001511_110 0.123932265 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 isoform X2 [Jatropha curcas]
11 Hb_000959_040 0.1272755867 - - PREDICTED: uncharacterized protein LOC105636570 [Jatropha curcas]
12 Hb_000521_170 0.1293360178 - - PREDICTED: callose synthase 1 [Jatropha curcas]
13 Hb_002762_130 0.1301782136 - - PREDICTED: protein MODIFIER OF SNC1 1 [Jatropha curcas]
14 Hb_003106_030 0.1302790702 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
15 Hb_000107_040 0.1315013336 - - nuclear pore complex protein nup153, putative [Ricinus communis]
16 Hb_018133_050 0.1404157015 - - PREDICTED: protein MODIFIER OF SNC1 1 [Jatropha curcas]
17 Hb_030565_090 0.1412292457 - - PREDICTED: DNA repair protein RAD50 [Jatropha curcas]
18 Hb_124677_060 0.1413347208 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
19 Hb_004371_010 0.1413415706 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]
20 Hb_000997_030 0.1437385979 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]

Gene co-expression network

sample Hb_006185_020 Hb_006185_020 Hb_000032_310 Hb_000032_310 Hb_006185_020--Hb_000032_310 Hb_000181_180 Hb_000181_180 Hb_006185_020--Hb_000181_180 Hb_003206_030 Hb_003206_030 Hb_006185_020--Hb_003206_030 Hb_144824_010 Hb_144824_010 Hb_006185_020--Hb_144824_010 Hb_000236_080 Hb_000236_080 Hb_006185_020--Hb_000236_080 Hb_000808_070 Hb_000808_070 Hb_006185_020--Hb_000808_070 Hb_000521_170 Hb_000521_170 Hb_000032_310--Hb_000521_170 Hb_000032_310--Hb_000808_070 Hb_003157_010 Hb_003157_010 Hb_000032_310--Hb_003157_010 Hb_000032_310--Hb_144824_010 Hb_001989_020 Hb_001989_020 Hb_000032_310--Hb_001989_020 Hb_000181_180--Hb_003206_030 Hb_000136_090 Hb_000136_090 Hb_000181_180--Hb_000136_090 Hb_012180_050 Hb_012180_050 Hb_000181_180--Hb_012180_050 Hb_000181_180--Hb_000236_080 Hb_001080_270 Hb_001080_270 Hb_000181_180--Hb_001080_270 Hb_001028_070 Hb_001028_070 Hb_000181_180--Hb_001028_070 Hb_000421_120 Hb_000421_120 Hb_003206_030--Hb_000421_120 Hb_002813_010 Hb_002813_010 Hb_003206_030--Hb_002813_010 Hb_030565_090 Hb_030565_090 Hb_003206_030--Hb_030565_090 Hb_002477_150 Hb_002477_150 Hb_003206_030--Hb_002477_150 Hb_000865_080 Hb_000865_080 Hb_003206_030--Hb_000865_080 Hb_000832_320 Hb_000832_320 Hb_144824_010--Hb_000832_320 Hb_000340_110 Hb_000340_110 Hb_144824_010--Hb_000340_110 Hb_001511_110 Hb_001511_110 Hb_144824_010--Hb_001511_110 Hb_005946_170 Hb_005946_170 Hb_144824_010--Hb_005946_170 Hb_029223_050 Hb_029223_050 Hb_144824_010--Hb_029223_050 Hb_164010_070 Hb_164010_070 Hb_144824_010--Hb_164010_070 Hb_000023_060 Hb_000023_060 Hb_000236_080--Hb_000023_060 Hb_000107_040 Hb_000107_040 Hb_000236_080--Hb_000107_040 Hb_001900_110 Hb_001900_110 Hb_000236_080--Hb_001900_110 Hb_000997_030 Hb_000997_030 Hb_000236_080--Hb_000997_030 Hb_003623_030 Hb_003623_030 Hb_000236_080--Hb_003623_030 Hb_001301_230 Hb_001301_230 Hb_000808_070--Hb_001301_230 Hb_000808_070--Hb_003157_010 Hb_006501_020 Hb_006501_020 Hb_000808_070--Hb_006501_020 Hb_018133_030 Hb_018133_030 Hb_000808_070--Hb_018133_030 Hb_007257_050 Hb_007257_050 Hb_000808_070--Hb_007257_050 Hb_000932_070 Hb_000932_070 Hb_000808_070--Hb_000932_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.68793 10.8547 1.05713 1.55599 5.00674 7.53616
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.81326 2.74795 1.203 4.7748 2.59865

CAGE analysis