Hb_006185_040

Information

Type -
Description -
Location Contig6185: 59887-61602
Sequence    

Annotation

kegg
ID rcu:RCOM_0654750
description hypothetical protein
nr
ID XP_012068920.1
description PREDICTED: verprolin [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L9J0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24733 PE=4 SV=1
Gene Ontology
ID GO:0044464
description ww domain-binding protein 11-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51340: 60459-61529
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006185_040 0.0 - - PREDICTED: verprolin [Jatropha curcas]
2 Hb_001013_050 0.1274373392 - - unnamed protein product [Coffea canephora]
3 Hb_005408_100 0.1366068874 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 14 [Jatropha curcas]
4 Hb_002510_100 0.1394908798 - - Root phototropism protein, putative [Ricinus communis]
5 Hb_000270_750 0.1428728852 - - PREDICTED: RING-H2 finger protein ATL46-like [Populus euphratica]
6 Hb_000181_230 0.1434867708 - - copper ion binding protein, putative [Ricinus communis]
7 Hb_000363_250 0.1459296627 - - PREDICTED: pirin-like protein [Malus domestica]
8 Hb_090361_010 0.1490827451 - - amino acid transporter, putative [Ricinus communis]
9 Hb_002973_030 0.1514845388 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
10 Hb_000320_270 0.1523969695 - - PREDICTED: 5'-adenylylsulfate reductase 1, chloroplastic [Jatropha curcas]
11 Hb_002344_080 0.1537581803 - - PREDICTED: protein YLS2-like [Populus euphratica]
12 Hb_002740_100 0.1543352046 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
13 Hb_000613_250 0.1561985797 - - PREDICTED: nudix hydrolase 2-like [Jatropha curcas]
14 Hb_003835_030 0.1566317415 - - glycosyltransferase, partial [Arabidopsis thaliana]
15 Hb_001948_090 0.1589242164 transcription factor TF Family: GRAS hypothetical protein POPTR_0005s14540g [Populus trichocarpa]
16 Hb_007441_360 0.159415849 - - PREDICTED: uncharacterized protein LOC105643270 [Jatropha curcas]
17 Hb_002004_010 0.1602038846 - - CBL-interacting protein kinase 9 [Populus trichocarpa]
18 Hb_002097_080 0.1623284755 - - phosphatidylinositol-4-phosphate 5-kinase, putative [Ricinus communis]
19 Hb_002686_210 0.1623445826 - - zinc finger protein, putative [Ricinus communis]
20 Hb_007483_120 0.1634668134 - - 60S ribosomal protein L32A [Hevea brasiliensis]

Gene co-expression network

sample Hb_006185_040 Hb_006185_040 Hb_001013_050 Hb_001013_050 Hb_006185_040--Hb_001013_050 Hb_005408_100 Hb_005408_100 Hb_006185_040--Hb_005408_100 Hb_002510_100 Hb_002510_100 Hb_006185_040--Hb_002510_100 Hb_000270_750 Hb_000270_750 Hb_006185_040--Hb_000270_750 Hb_000181_230 Hb_000181_230 Hb_006185_040--Hb_000181_230 Hb_000363_250 Hb_000363_250 Hb_006185_040--Hb_000363_250 Hb_003835_030 Hb_003835_030 Hb_001013_050--Hb_003835_030 Hb_008092_020 Hb_008092_020 Hb_001013_050--Hb_008092_020 Hb_000589_330 Hb_000589_330 Hb_001013_050--Hb_000589_330 Hb_000472_020 Hb_000472_020 Hb_001013_050--Hb_000472_020 Hb_000613_250 Hb_000613_250 Hb_001013_050--Hb_000613_250 Hb_002097_130 Hb_002097_130 Hb_001013_050--Hb_002097_130 Hb_000230_470 Hb_000230_470 Hb_005408_100--Hb_000230_470 Hb_000109_190 Hb_000109_190 Hb_005408_100--Hb_000109_190 Hb_002909_100 Hb_002909_100 Hb_005408_100--Hb_002909_100 Hb_000320_270 Hb_000320_270 Hb_005408_100--Hb_000320_270 Hb_002740_100 Hb_002740_100 Hb_005408_100--Hb_002740_100 Hb_000753_120 Hb_000753_120 Hb_005408_100--Hb_000753_120 Hb_012308_050 Hb_012308_050 Hb_002510_100--Hb_012308_050 Hb_002510_100--Hb_000613_250 Hb_002510_100--Hb_001013_050 Hb_003849_200 Hb_003849_200 Hb_002510_100--Hb_003849_200 Hb_001048_070 Hb_001048_070 Hb_002510_100--Hb_001048_070 Hb_007483_120 Hb_007483_120 Hb_002510_100--Hb_007483_120 Hb_173107_020 Hb_173107_020 Hb_000270_750--Hb_173107_020 Hb_009771_040 Hb_009771_040 Hb_000270_750--Hb_009771_040 Hb_114733_010 Hb_114733_010 Hb_000270_750--Hb_114733_010 Hb_002250_140 Hb_002250_140 Hb_000270_750--Hb_002250_140 Hb_002168_070 Hb_002168_070 Hb_000270_750--Hb_002168_070 Hb_001269_530 Hb_001269_530 Hb_000270_750--Hb_001269_530 Hb_005724_040 Hb_005724_040 Hb_000181_230--Hb_005724_040 Hb_000181_230--Hb_007483_120 Hb_000181_230--Hb_002740_100 Hb_002099_060 Hb_002099_060 Hb_000181_230--Hb_002099_060 Hb_002344_080 Hb_002344_080 Hb_000181_230--Hb_002344_080 Hb_002685_160 Hb_002685_160 Hb_000181_230--Hb_002685_160 Hb_000659_040 Hb_000659_040 Hb_000363_250--Hb_000659_040 Hb_000215_290 Hb_000215_290 Hb_000363_250--Hb_000215_290 Hb_144703_010 Hb_144703_010 Hb_000363_250--Hb_144703_010 Hb_005271_180 Hb_005271_180 Hb_000363_250--Hb_005271_180 Hb_001951_230 Hb_001951_230 Hb_000363_250--Hb_001951_230 Hb_000363_250--Hb_000613_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.328079 11.7201 4.68921 13.5656 1.49308 0.786669
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0535761 0.126458 0.0795731 3.25865 8.37684

CAGE analysis