Hb_006185_050

Information

Type -
Description -
Location Contig6185: 64475-68824
Sequence    

Annotation

kegg
ID tcc:TCM_029088
description Ribosomal protein L18ae family
nr
ID XP_006369277.1
description hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
swissprot
ID Q8L9S1
description 60S ribosomal protein L18a-like protein OS=Arabidopsis thaliana GN=At1g29970 PE=2 SV=2
trembl
ID U5GTR3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s20590g PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l18a-like protein isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51341: 64298-68798
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006185_050 0.0 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
2 Hb_001305_010 0.0515822236 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic [Jatropha curcas]
3 Hb_000392_300 0.0587105527 - - PREDICTED: RINT1-like protein MAG2 [Jatropha curcas]
4 Hb_000089_220 0.0588809879 - - PREDICTED: protein FAM133-like [Populus euphratica]
5 Hb_000327_120 0.0597246933 - - FGFR1 oncogene partner, putative [Ricinus communis]
6 Hb_001595_030 0.0613144968 - - PREDICTED: nuclear inhibitor of protein phosphatase 1 isoform X1 [Jatropha curcas]
7 Hb_003175_010 0.0678254604 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]
8 Hb_001301_160 0.0681342083 - - PREDICTED: CRS2-associated factor 2, mitochondrial [Jatropha curcas]
9 Hb_048937_040 0.0685684953 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
10 Hb_007951_060 0.0690508376 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
11 Hb_001677_210 0.0692232546 - - hypothetical protein JCGZ_01374 [Jatropha curcas]
12 Hb_003417_020 0.0704801763 - - PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]
13 Hb_001439_150 0.0713211626 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15340, mitochondrial [Jatropha curcas]
14 Hb_003001_140 0.0721406449 - - PREDICTED: RPM1-interacting protein 4 [Jatropha curcas]
15 Hb_002496_030 0.0725501297 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Jatropha curcas]
16 Hb_000926_280 0.072955392 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
17 Hb_096563_010 0.0731144478 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]
18 Hb_003464_050 0.0754503808 - - hypothetical protein POPTR_0006s11880g [Populus trichocarpa]
19 Hb_000030_300 0.0754699507 - - Thioredoxin, putative [Ricinus communis]
20 Hb_054865_100 0.0764822077 - - PREDICTED: probable protein S-acyltransferase 12 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_006185_050 Hb_006185_050 Hb_001305_010 Hb_001305_010 Hb_006185_050--Hb_001305_010 Hb_000392_300 Hb_000392_300 Hb_006185_050--Hb_000392_300 Hb_000089_220 Hb_000089_220 Hb_006185_050--Hb_000089_220 Hb_000327_120 Hb_000327_120 Hb_006185_050--Hb_000327_120 Hb_001595_030 Hb_001595_030 Hb_006185_050--Hb_001595_030 Hb_003175_010 Hb_003175_010 Hb_006185_050--Hb_003175_010 Hb_007951_060 Hb_007951_060 Hb_001305_010--Hb_007951_060 Hb_003417_020 Hb_003417_020 Hb_001305_010--Hb_003417_020 Hb_002530_030 Hb_002530_030 Hb_001305_010--Hb_002530_030 Hb_001305_010--Hb_000327_120 Hb_000853_430 Hb_000853_430 Hb_001305_010--Hb_000853_430 Hb_006065_020 Hb_006065_020 Hb_000392_300--Hb_006065_020 Hb_048937_040 Hb_048937_040 Hb_000392_300--Hb_048937_040 Hb_000030_010 Hb_000030_010 Hb_000392_300--Hb_000030_010 Hb_000392_300--Hb_000089_220 Hb_002496_030 Hb_002496_030 Hb_000392_300--Hb_002496_030 Hb_003406_010 Hb_003406_010 Hb_000089_220--Hb_003406_010 Hb_003642_060 Hb_003642_060 Hb_000089_220--Hb_003642_060 Hb_003001_140 Hb_003001_140 Hb_000089_220--Hb_003001_140 Hb_003010_030 Hb_003010_030 Hb_000089_220--Hb_003010_030 Hb_000926_280 Hb_000926_280 Hb_000089_220--Hb_000926_280 Hb_002685_140 Hb_002685_140 Hb_000327_120--Hb_002685_140 Hb_000327_120--Hb_007951_060 Hb_001635_170 Hb_001635_170 Hb_000327_120--Hb_001635_170 Hb_054865_100 Hb_054865_100 Hb_000327_120--Hb_054865_100 Hb_000327_120--Hb_001595_030 Hb_000879_200 Hb_000879_200 Hb_001595_030--Hb_000879_200 Hb_036790_100 Hb_036790_100 Hb_001595_030--Hb_036790_100 Hb_000038_170 Hb_000038_170 Hb_001595_030--Hb_000038_170 Hb_002603_120 Hb_002603_120 Hb_001595_030--Hb_002603_120 Hb_000808_270 Hb_000808_270 Hb_003175_010--Hb_000808_270 Hb_003175_010--Hb_000926_280 Hb_019280_040 Hb_019280_040 Hb_003175_010--Hb_019280_040 Hb_000030_300 Hb_000030_300 Hb_003175_010--Hb_000030_300 Hb_003766_040 Hb_003766_040 Hb_003175_010--Hb_003766_040 Hb_003175_010--Hb_048937_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.2005 15.9849 14.5851 11.4648 30.3992 28.629
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.3366 27.9765 25.4749 12.3202 8.62173

CAGE analysis