Hb_006187_020

Information

Type -
Description -
Location Contig6187: 51939-53976
Sequence    

Annotation

kegg
ID rcu:RCOM_1631420
description Auxin-induced protein 5NG4, putative
nr
ID XP_011015432.1
description PREDICTED: WAT1-related protein At5g07050-like [Populus euphratica]
swissprot
ID Q9FL41
description WAT1-related protein At5g07050 OS=Arabidopsis thaliana GN=At5g07050 PE=2 SV=1
trembl
ID B9RU50
description Auxin-induced protein 5NG4, putative OS=Ricinus communis GN=RCOM_1631420 PE=4 SV=1
Gene Ontology
ID GO:0016021
description wat1-related protein at5g07050-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51347: 52359-53135 , PASA_asmbl_51348: 53194-53927
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006187_020 0.0 - - PREDICTED: WAT1-related protein At5g07050-like [Populus euphratica]
2 Hb_001766_140 0.0512633281 - - hypothetical protein JCGZ_18656 [Jatropha curcas]
3 Hb_005695_050 0.0927448082 - - PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]
4 Hb_000429_080 0.0963444793 - - conserved hypothetical protein [Ricinus communis]
5 Hb_027402_110 0.1110909949 - - PREDICTED: uncharacterized protein LOC105640545 [Jatropha curcas]
6 Hb_003442_020 0.1174208359 - - ccd1, putative [Ricinus communis]
7 Hb_004157_060 0.1206574853 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 22-like [Jatropha curcas]
8 Hb_010261_050 0.1207757656 - - DNA binding protein, putative [Ricinus communis]
9 Hb_003337_010 0.122405026 - - conserved hypothetical protein [Ricinus communis]
10 Hb_008200_010 0.122612799 - - PREDICTED: ABC transporter G family member 14-like isoform X1 [Jatropha curcas]
11 Hb_000579_210 0.1229555047 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
12 Hb_103000_010 0.126668243 - - hypothetical protein POPTR_0007s02210g [Populus trichocarpa]
13 Hb_004652_040 0.1310007471 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
14 Hb_001584_250 0.1319876789 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
15 Hb_001948_100 0.1329166928 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001502_010 0.1331313451 - - hypothetical protein JCGZ_04288 [Jatropha curcas]
17 Hb_074100_010 0.1337255089 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
18 Hb_002014_120 0.134696786 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP8 [Populus euphratica]
19 Hb_003839_060 0.1363595322 - - PREDICTED: BURP domain-containing protein 11-like [Gossypium raimondii]
20 Hb_000174_130 0.1378385177 - - flowering locus T-like protein [Fagus crenata]

Gene co-expression network

sample Hb_006187_020 Hb_006187_020 Hb_001766_140 Hb_001766_140 Hb_006187_020--Hb_001766_140 Hb_005695_050 Hb_005695_050 Hb_006187_020--Hb_005695_050 Hb_000429_080 Hb_000429_080 Hb_006187_020--Hb_000429_080 Hb_027402_110 Hb_027402_110 Hb_006187_020--Hb_027402_110 Hb_003442_020 Hb_003442_020 Hb_006187_020--Hb_003442_020 Hb_004157_060 Hb_004157_060 Hb_006187_020--Hb_004157_060 Hb_001766_140--Hb_027402_110 Hb_001766_140--Hb_005695_050 Hb_001766_140--Hb_004157_060 Hb_001766_140--Hb_000429_080 Hb_008200_010 Hb_008200_010 Hb_001766_140--Hb_008200_010 Hb_005695_050--Hb_008200_010 Hb_002374_070 Hb_002374_070 Hb_005695_050--Hb_002374_070 Hb_005695_050--Hb_027402_110 Hb_023536_020 Hb_023536_020 Hb_005695_050--Hb_023536_020 Hb_001584_250 Hb_001584_250 Hb_000429_080--Hb_001584_250 Hb_032299_020 Hb_032299_020 Hb_000429_080--Hb_032299_020 Hb_009851_120 Hb_009851_120 Hb_000429_080--Hb_009851_120 Hb_001502_010 Hb_001502_010 Hb_000429_080--Hb_001502_010 Hb_000999_060 Hb_000999_060 Hb_000429_080--Hb_000999_060 Hb_001675_260 Hb_001675_260 Hb_027402_110--Hb_001675_260 Hb_027402_110--Hb_008200_010 Hb_027402_110--Hb_001502_010 Hb_001255_030 Hb_001255_030 Hb_027402_110--Hb_001255_030 Hb_010261_050 Hb_010261_050 Hb_003442_020--Hb_010261_050 Hb_003839_060 Hb_003839_060 Hb_003442_020--Hb_003839_060 Hb_003337_010 Hb_003337_010 Hb_003442_020--Hb_003337_010 Hb_001104_250 Hb_001104_250 Hb_003442_020--Hb_001104_250 Hb_123887_010 Hb_123887_010 Hb_003442_020--Hb_123887_010 Hb_003777_100 Hb_003777_100 Hb_003442_020--Hb_003777_100 Hb_004157_060--Hb_001675_260 Hb_004157_060--Hb_027402_110 Hb_000021_010 Hb_000021_010 Hb_004157_060--Hb_000021_010 Hb_001318_180 Hb_001318_180 Hb_004157_060--Hb_001318_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.87378 0.704649 6.5844 0 0.0175491
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0456194 0.0358823 0 0 0.147662

CAGE analysis