Hb_006198_040

Information

Type -
Description -
Location Contig6198: 23570-24724
Sequence    

Annotation

kegg
ID rcu:RCOM_1721290
description hypothetical protein
nr
ID XP_002521117.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q3EB08
description F-box/kelch-repeat protein At3g24760 OS=Arabidopsis thaliana GN=At3g24760 PE=2 SV=1
trembl
ID B9S548
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1721290 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51367: 23879-24869 , PASA_asmbl_51368: 23879-25547
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006198_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003142_080 0.0775943067 - - receptor serine/threonine kinase, putative [Ricinus communis]
3 Hb_000130_480 0.0781817302 - - PREDICTED: histone-lysine N-methyltransferase SETD1B [Jatropha curcas]
4 Hb_185474_020 0.0800952182 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
5 Hb_000033_010 0.0806145785 - - Protein MLO, putative [Ricinus communis]
6 Hb_124579_020 0.0903034144 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
7 Hb_000836_030 0.0935087438 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
8 Hb_002635_010 0.0948877542 - - homogentisate phytyl transferase [Hevea brasiliensis]
9 Hb_001652_130 0.0972558383 - - hypothetical protein B456_002G193900 [Gossypium raimondii]
10 Hb_010311_020 0.0993450808 - - lrr receptor protein kinase, putative [Ricinus communis]
11 Hb_000380_140 0.1028820669 - - PREDICTED: uncharacterized protein LOC105628069 [Jatropha curcas]
12 Hb_029223_010 0.1056428663 - - PREDICTED: ACT domain-containing protein ACR10 [Jatropha curcas]
13 Hb_004607_160 0.105755774 - - PREDICTED: uncharacterized protein LOC105134931 [Populus euphratica]
14 Hb_004724_260 0.1092182979 - - PREDICTED: 40S ribosomal protein S14-2-like [Gossypium raimondii]
15 Hb_082550_010 0.1161607296 - - hypothetical protein CISIN_1g0081081mg, partial [Citrus sinensis]
16 Hb_167211_010 0.1182936266 - - PREDICTED: glutamate receptor 3.4-like isoform X1 [Jatropha curcas]
17 Hb_005332_050 0.1206326662 - - hypothetical protein POPTR_0017s10650g [Populus trichocarpa]
18 Hb_001278_090 0.1246061748 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
19 Hb_000705_040 0.1262643677 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002636_070 0.1279576096 - - PREDICTED: putative U-box domain-containing protein 42 [Jatropha curcas]

Gene co-expression network

sample Hb_006198_040 Hb_006198_040 Hb_003142_080 Hb_003142_080 Hb_006198_040--Hb_003142_080 Hb_000130_480 Hb_000130_480 Hb_006198_040--Hb_000130_480 Hb_185474_020 Hb_185474_020 Hb_006198_040--Hb_185474_020 Hb_000033_010 Hb_000033_010 Hb_006198_040--Hb_000033_010 Hb_124579_020 Hb_124579_020 Hb_006198_040--Hb_124579_020 Hb_000836_030 Hb_000836_030 Hb_006198_040--Hb_000836_030 Hb_003142_080--Hb_185474_020 Hb_003142_080--Hb_124579_020 Hb_003142_080--Hb_000033_010 Hb_002635_010 Hb_002635_010 Hb_003142_080--Hb_002635_010 Hb_029223_010 Hb_029223_010 Hb_003142_080--Hb_029223_010 Hb_000130_480--Hb_002635_010 Hb_004607_160 Hb_004607_160 Hb_000130_480--Hb_004607_160 Hb_000130_480--Hb_124579_020 Hb_000130_480--Hb_003142_080 Hb_000130_480--Hb_000836_030 Hb_010311_020 Hb_010311_020 Hb_185474_020--Hb_010311_020 Hb_000380_140 Hb_000380_140 Hb_185474_020--Hb_000380_140 Hb_001652_130 Hb_001652_130 Hb_185474_020--Hb_001652_130 Hb_185474_020--Hb_124579_020 Hb_000033_010--Hb_001652_130 Hb_002636_070 Hb_002636_070 Hb_000033_010--Hb_002636_070 Hb_004724_260 Hb_004724_260 Hb_000033_010--Hb_004724_260 Hb_000033_010--Hb_029223_010 Hb_124579_020--Hb_010311_020 Hb_000416_010 Hb_000416_010 Hb_124579_020--Hb_000416_010 Hb_124579_020--Hb_002635_010 Hb_000836_030--Hb_004607_160 Hb_000784_060 Hb_000784_060 Hb_000836_030--Hb_000784_060 Hb_002095_020 Hb_002095_020 Hb_000836_030--Hb_002095_020 Hb_001369_390 Hb_001369_390 Hb_000836_030--Hb_001369_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0185877 12.9293 25.3115 32.6859 0 0.0360288
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.297334 0.133646 0.930446 24.1362 73.6184

CAGE analysis